Gene Information

Name : tpx (PFL_2858)
Accession : YP_259964.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : thiol peroxidase
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG2077
EC number : 1.11.1.15
Position : 3188065 - 3188565 bp
Length : 501 bp
Strand : +
Note : identified by similarity to SP:P0A862; match to protein family HMM PF00578; match to protein family HMM PF08534

DNA sequence : 
ATGGCTCAAGTCACTCTCAAAGGCAACCCGGTGCAGGTTAATGGCCAACTGCCGCAAGTCGGTTCCAAAGCCCCAGCGTT
CACCCTGGTGGGCGCAGGCCTGGCCGATGTTTCCCTGAGCAGCCTCGCCGGCAAGCGCAAGGTGCTGAACATCTTCCCAA
GCGTCGACACCCCGACCTGCGCCACCTCGGTGCGCAAGTTCAACGCCCAGGCCAACGAGCTGGCCAACACCGTGGTGCTG
TGCATCTCTGCCGACCTGCCATTCGCCCAGGCACGCTTCTGCGGCGCCGAAGGCCTGGAAAACGTGCAGAACCTGTCGAC
CCTGCGTGGCCGCGAGTTCATCGAGAACTACGGCGTGGCCATCGCCGACGGCCCGCTGGCCGGCCTGACTGCCCGCGCCG
TGGTGGTGCTGGATGAAAACGACAAGGTGCTGCACAGCGAGCTGGTCAAGGAAATCGCCGAAGAGCCGAACTACGACGCG
GCCCTGGCCGTGCTCAAGTAA

Protein sequence : 
MAQVTLKGNPVQVNGQLPQVGSKAPAFTLVGAGLADVSLSSLAGKRKVLNIFPSVDTPTCATSVRKFNAQANELANTVVL
CISADLPFAQARFCGAEGLENVQNLSTLRGREFIENYGVAIADGPLAGLTARAVVVLDENDKVLHSELVKEIAEEPNYDA
ALAVLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tagD AAK20781.1 toxR-activated gene D protein Virulence VPI Protein 8e-36 49
tpx NP_230472.1 thiol peroxidase Virulence VPI-1 Protein 1e-35 49
tagD AAK20751.1 toxR-activated gene D protein Virulence VPI Protein 8e-36 48
tpx YP_001216305.1 thiol peroxidase Not tested VPI-1 Protein 1e-35 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tpx YP_259964.1 thiol peroxidase VFG0087 Protein 3e-36 49