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Name : gspE (PFL_2757) Accession : YP_259864.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : general secretion protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3048781 - 3050202 bp Length : 1422 bp Strand : + Note : identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533 DNA sequence : ATGACCACCCAGTTGCCCTACGCCTGGGCCAAGTCCCAGCGCATCCTCCTGCGCCACACCGAGCAGGGCGCGGTGCTGCT GGTGTGCCCCTCGACGCCTGGCTGGTCCATCAGCGAAGCCCGCCGCCAGTTCGGCCCGGCGCGCCTGGAGCGGATTCGCG ACGAGGAACTCGACGGCCTGCTGGCCACCGCCTACGCCGACACCGGCAGCGCAGCAGCGGTGGTCGGGGCGGCGGAGAAC GAGGTGGACCTGGACCGCCTGATGCAGGACATGCCGGAAATCACCGACCTGCTGGACACCCAGGACGGCGCCCCGGTGAT CCGCATGATCAACGCCTTGCTCACCCAGGCCGCGCGGGACGAGGCCAGCGATATCCATATCGAACCCTTCGAGACCCATT CGGTGGTGCGCTACCGGGTCGACGGCACCCTGCGCGACGTGGTGTCGCCACGCAAGGCGCTGCACGGCGCGCTGGTGTCG CGGATCAAGATCATGGCCCAGCTGGACATTGCCGAAAAACGCCTGCCCCAGGACGGGCGCATCGCCCTGCGGGTGGCCGG GCGGCCCATCGATATCCGTGTGTCCACGGTGCCCACCGGGCATGGCGAGCGGGTGGTGATGCGCCTGCTGGACAAGCAGG CCGGGCGCCTGCAACTGGAAACCCTGGGCATGGACCCGGAGCTGCTGGCGCGCCTGGATACCCTGATCCGCCAGCCCCAC GGCATCGTCCTGGTCACCGGGCCCACCGGCAGCGGCAAGACCACCAGCCTCTACGCGGCCCTGGCCCGGCTGGATGCCAG CACCAGCAATATCCTCACCGTCGAGGACCCGGTGGAATACGACCTGCCGGGCATCAGCCAGATCCAGGTCAACGCCAAGA TCGACATGACCTTCGCCCTGGCCCTGCGGGCGATCCTGCGCCAGGACCCGGACATCATCATGATCGGCGAGATCCGCGAC CTGGAGACCGCGCAGATCGCGGTCCAGGCCTCGCTCACCGGGCACCTGGTGCTGGCGACCCTGCACACCAACGACGCGGT ATCGGCGGTCAACCGCCTGATCGACATGGGGGTGGAGCCGTTTCTCCTGGCTTCGTCGATGCTCGGGGTGCTGGCCCAGC GCCTGGTGCGGCGCCTGTGCAGCCAGTGCAAGGAGCAGGACCCGGCCAACCCCGGCACCTGGCGCCCGGTGGGCTGCCCG GCCTGCAACCACATCGGCTACAGCGGGCGAACCGGGATCCATGAGCTGTTCTGCATCGATGACGATGTGCGCAGCCTGAT CCACCAGGGCGCCGAGGAGCAGGCCCTGCGTGCCGCCGCGCGCCGGGCCGGGATGTTCAGCATGCGCGAGGACGGTGAAC GCTGGGTGCGCAGCGGCGCCACCGCGCCGGAAGAAATCCTGCGTGTGACACGGGACGCCTGA Protein sequence : MTTQLPYAWAKSQRILLRHTEQGAVLLVCPSTPGWSISEARRQFGPARLERIRDEELDGLLATAYADTGSAAAVVGAAEN EVDLDRLMQDMPEITDLLDTQDGAPVIRMINALLTQAARDEASDIHIEPFETHSVVRYRVDGTLRDVVSPRKALHGALVS RIKIMAQLDIAEKRLPQDGRIALRVAGRPIDIRVSTVPTGHGERVVMRLLDKQAGRLQLETLGMDPELLARLDTLIRQPH GIVLVTGPTGSGKTTSLYAALARLDASTSNILTVEDPVEYDLPGISQIQVNAKIDMTFALALRAILRQDPDIIMIGEIRD LETAQIAVQASLTGHLVLATLHTNDAVSAVNRLIDMGVEPFLLASSMLGVLAQRLVRRLCSQCKEQDPANPGTWRPVGCP ACNHIGYSGRTGIHELFCIDDDVRSLIHQGAEEQALRAAARRAGMFSMREDGERWVRSGATAPEEILRVTRDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-105 | 58 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 8e-106 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE | YP_259864.1 | general secretion protein E | VFG0182 | Protein | 3e-114 | 62 |
| gspE | YP_259864.1 | general secretion protein E | VFG2048 | Protein | 8e-105 | 57 |
| gspE | YP_259864.1 | general secretion protein E | VFG1876 | Protein | 9e-111 | 51 |
| gspE | YP_259864.1 | general secretion protein E | VFG2426 | Protein | 2e-74 | 48 |
