Gene Information

Name : PFL_2573 (PFL_2573)
Accession : YP_259680.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2849533 - 2850216 bp
Length : 684 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGACCCGCATTCTGACCATCGAAGACGACGCCGTGACCGCCCGGGAAATCGTCGCCGAACTGAGCAGCCACGGCCTCGA
CGTGGATTGGGTGGACAATGGCCGTGAGGGCCTGGTGCGCGCCGTGAGCGGCGACTACGACCTGATCACCCTGGACCGCA
TGCTGCCGGAACTGGACGGCCTGGCCATCGTCACCACCCTGCGCACCATCGGTGTGTCGACACCGATCCTGATGATCAGC
GCCCTCTCCGACGTCGATGAACGGGTGCGCGGCCTGCGGGCCGGGGGCGACGACTACCTGACCAAGCCCTTCGCCTCCGA
CGAGATGGCGGCCCGGGTCGAAGTGCTGCTGCGGCGCAAGAACACGGTCAAGGATTTCGACACCAGCCTGCGGGTGGCGG
ACCTGGAACTGAACCTGATCAGCCGCGAGGCAACCCGCGCCGACCAGTTGCTGAGCCTGCTGCCCACCGAATACAAGCTG
CTGGAATTCCTCATGCGCAACACCGGGCAGATCCTCTCGCGGATGATGATCTTCGAGGAGGTCTGGGGCTATCACTTCGA
CCCCGGGACCAATTTGATCGACGTGCACATCGGCCGCCTGCGCAAGAAGATCGACCCGCCCGGCATGACCCCGTTGATCC
GCACCGTGCGAGGCTCGGGTTATGTCATTGCTGAACCCCTCTAA

Protein sequence : 
MTRILTIEDDAVTAREIVAELSSHGLDVDWVDNGREGLVRAVSGDYDLITLDRMLPELDGLAIVTTLRTIGVSTPILMIS
ALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRKNTVKDFDTSLRVADLELNLISREATRADQLLSLLPTEYKL
LEFLMRNTGQILSRMMIFEEVWGYHFDPGTNLIDVHIGRLRKKIDPPGMTPLIRTVRGSGYVIAEPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-32 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_2573 YP_259680.1 DNA-binding response regulator BAC0197 Protein 1e-39 46
PFL_2573 YP_259680.1 DNA-binding response regulator BAC0347 Protein 5e-40 45
PFL_2573 YP_259680.1 DNA-binding response regulator BAC0125 Protein 3e-38 45
PFL_2573 YP_259680.1 DNA-binding response regulator BAC0111 Protein 2e-42 45
PFL_2573 YP_259680.1 DNA-binding response regulator BAC0308 Protein 8e-40 44
PFL_2573 YP_259680.1 DNA-binding response regulator BAC0083 Protein 2e-40 42
PFL_2573 YP_259680.1 DNA-binding response regulator NC_012469.1.7686381. Protein 1e-38 41
PFL_2573 YP_259680.1 DNA-binding response regulator BAC0638 Protein 6e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_2573 YP_259680.1 DNA-binding response regulator VFG1390 Protein 1e-37 42
PFL_2573 YP_259680.1 DNA-binding response regulator VFG0596 Protein 2e-32 42
PFL_2573 YP_259680.1 DNA-binding response regulator VFG1389 Protein 2e-31 41