Gene Information

Name : pedI (PFL_2222)
Accession : YP_259329.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : 1.2.1.3
Position : 2482364 - 2483884 bp
Length : 1521 bp
Strand : +
Note : identified by similarity to GB:ABR57228.1; match to protein family HMM PF00171

DNA sequence : 
ATGATCTACGCACAACCCGGAACCCCAGGCGCCGTCGTGTCCTTCAAGCCACGCTACGGCAATTTCATCGGCGGCCAGTT
CGTGCCGCCGGTGGCTGGCCAGTACTTCAGCAACACCTCGCCGGTCAACGGTGAAGTGATCGCCGAATTCCCCCGTTCTA
GCGCCGCCGATATCGACCTGGCCCTGGACGCCGCCCATGCCGCCGCCGAGGCCTGGGGCAAGACCTCGGTCCAGGACCGC
TCGCGGGTGCTGCTGAAGATTGCCGACCGCATCGAGCAGAACCTGGAGATCCTCGCGGTCAGCGAAACCTGGGACAACGG
CAAGGCCGTGCGCGAAACCCTCAACGCCGACGTGCCCCTGGCCGCCGACCATTTCCGCTACTTCGCCGGTTGCATCCGCG
CCCAGGAAGGCGGCGCCGCGGAGATCAACGAACTGACTACCGCCTACCATTTCCACGAACCCCTGGGCGTGGTCGGGCAG
ATCATCCCGTGGAACTTCCCGCTGCTGATGGCCGCCTGGAAGCTGGCCCCGGCCCTGGCCGCCGGCAACTGCGTGGTGCT
CAAGCCCGCCGAGCAGACCCCGCTGTCGATCATGGTCTTCGCCGAGCTGATCGCCGACCTGCTGCCGGCCGGCGTGCTGA
ACATCGTCCAGGGCTTTGGCCGCGAAGCCGGCGAGGCCCTGGCCACCAGCAAGCGCATCGCCAAGATCGCTTTCACCGGC
TCGACCCCGGTGGGCTCGCACATCATGAAATGCGCGGCCGAGAACATCATTCCGTCCACCGTCGAACTGGGCGGAAAGTC
GCCGAACATCTTCTTCGAAGACATCATGCAGGCCGAGCCCAAGTTCATCGAAAAGGCCGCCGAAGGCCTGGTGCTGGCGT
TCTTCAACCAGGGGGAAGTCTGCACCTGCCCATCCCGGGCCCTGGTCCAGGAATCGATCTACGAGCCGTTCATGGCCGAG
GTGATGAAGAAGATCGTCAAGATCAAGCGCGGCAACCCGCTGGACACCGAGACCATGGTCGGCGCCCAGGCGTCGCAGCA
GCAGTACGAGAAGATCCTCTCCTACCTGCAGATCGCCCAGGAGGAGGGCGCCGAGCTGCTCACCGGTGGCGCCGCCGAGC
TGTTGGAAGGTGACCTGGCCAGCGGCTATTACATCCAGCCGACCCTGCTCAAGGGCCACAACAAGATGCGCGTGTTCCAG
GAAGAGATCTTCGGCCCGGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAGGCCCTGGCGATCGCCAACGACAGCGA
GTTCGGCCTGGGCGCCGGGCTGTGGACCCGCGACATCAACCGCGCCTACCGCATGGGCCGGGCGATCAAGGCCGGCCGCG
TGTGGACCAACTGCTACCACCTGTACCCGGCCCACGCCGCGTTCGGTGGCTACAAGAAATCCGGGGTGGGCCGCGAGACC
CACAAGATGATGCTCGACCACTACCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAACCCCCTGGGCTTCTTCTA
A

Protein sequence : 
MIYAQPGTPGAVVSFKPRYGNFIGGQFVPPVAGQYFSNTSPVNGEVIAEFPRSSAADIDLALDAAHAAAEAWGKTSVQDR
SRVLLKIADRIEQNLEILAVSETWDNGKAVRETLNADVPLAADHFRYFAGCIRAQEGGAAEINELTTAYHFHEPLGVVGQ
IIPWNFPLLMAAWKLAPALAAGNCVVLKPAEQTPLSIMVFAELIADLLPAGVLNIVQGFGREAGEALATSKRIAKIAFTG
STPVGSHIMKCAAENIIPSTVELGGKSPNIFFEDIMQAEPKFIEKAAEGLVLAFFNQGEVCTCPSRALVQESIYEPFMAE
VMKKIVKIKRGNPLDTETMVGAQASQQQYEKILSYLQIAQEEGAELLTGGAAELLEGDLASGYYIQPTLLKGHNKMRVFQ
EEIFGPVVGVTTFKDEAEALAIANDSEFGLGAGLWTRDINRAYRMGRAIKAGRVWTNCYHLYPAHAAFGGYKKSGVGRET
HKMMLDHYQQTKNLLVSYDINPLGFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 6e-141 67
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 3e-148 66
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 3e-148 66
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 3e-148 66
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-147 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pedI YP_259329.1 aldehyde dehydrogenase VFG0082 Protein 2e-141 67