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Name : PFL_1978 (PFL_1978) Accession : YP_259097.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : C-5 cytosine-specific DNA methylase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0270 EC number : - Position : 2209446 - 2211179 bp Length : 1734 bp Strand : - Note : identified by match to protein family HMM PF00145 DNA sequence : ATGCTCGTTAAACGTACCTACACCCACTTTGGTTTCTGCTGCGGCCTGGGCTCAGGCGCTGCAGGCTTCAACGACAGCTC ACTCCAGATCGCTCAGATGCTCGGCAACTGGCGTTGCATCGGCGGGGTTGATGTCGATCCCGCCGGCCTGGCCGACTTCG AAAACTTCACTGGCGTTAAAGGTACGCTCAGGGATCTGTTCACCCGCGAGCAATACACCGCGTTCCACGGGGCGGAACCG CCTGCAGGCTGGATTGAGGCTACCGCCGAAGACATTCGACGCACTGCTGGGAACGAAGATCCGGATGCCGTGTTCATTTC CAGCCCCTGCAAGGGGGCCTCGGGCTTGCTGCCTGAATCCATGAGCCTGACACCCAAGTACCAAGCCCTCAACGAGCTGA CCTTACGCTGCGTCTGGCTGATGTTGGAAGCCTGGCAACACAACCCCGTTAGCCTGATTGTGTTCGAGAACGTCCCTCGC CTTGCCTCACGCGGCCGTCACCTACTCGACCAAATCGTTAAGCTGTTTGCCCACTACGGGTACGCGGTAAACGAAACGGT CCACGACTGCGGAGAAATCGCCGGTCTCGCTCAGAGCCGCAAGCGATTCCTGTTAGTAGCCCGCCACATCGAGAAAGTCC GAGCGTTCCTCTACCAACCCCAACAACACCGCCTGCGCGGCGTTGGCGAGATCCTGAGGCGCATGCCACTGGCCGGCGAT ATCGAGCTGGCCGGGCCTATGCATCGCGTCCCAGCGCTCCACTGGAAAACCTGGGTCCGCCTCGCCATGGTTGAGCCAGG CAAAGACTGGCGCTCACTCAACCGCCTGAGCGTTGAGAACGGATTCCTACGCGACTTCCTGATTGTTCCGGAGTACAGGG CGGGATACTTGGGCGTCAATCGCTGGGACGACCCAACAGGCGTCATTGCCGGCCGCAACACCCCCACAAACGGAAACTAT TCGGTGGCAGATCCGCGCCCCAGCAGCTCGGCTGAGTACGCGCAGTTCGGGGTGATTCCATGGGAGCGGCATTGCGGGGT CGTCACCGGGCAGCGTAGCCCTGGCCAGGGCACGTTCAGCGTGGCCGACCCACGCCCAAACTGGAAACGCCACTCCAACA ATTACCGGGTGGTACCGTTCGCCAACTTTGCCGGCACCATCATCGCCGGCGGCAAAGGCGTACAAGGTGGCTGGCAATCC GTCGCGGATCCTCGCGTACTCAATCGCAAGAAGGGCGACGCCTACCTCACAGGAGGTCATTACGGCGTGGTCGATTGGAA CGGCAGCGCCGGCGCAGTTTCGGCGAACGCTCGCCACGACAATGGCCGCTGGTCAGTCGCTGACACCCGCATGCCAGCAG CCGACGACCGACTGGCGTGCGTGATCCGTAGCCCGTCGAACACCTGGAACAGACCATTCACCACCCTGGAGCTGGCCGCG CTGCAATCCATGTTCGATCCCGAGGACATGTGGCAGCCGAACCAGGACACGGGCGCCCTGGAGCCGGTCGGCAAACCCTT CATGTTGCACGGAAACAACGACGGCGCCTGGCGTGAACGAATCGGGAACGCGGTGCCACGCAAGGCCGGCAAGGCCATTG CTGACGTGATGCTTAGTACGCTGATGCTTAACGAAATGGGCGAAACATTCACGCTTAGCAGCGTGCCGGTATGGGTTCGT CCGCTGGCCATCGCCTTTAGCATGCCCGGGCAACAAGTAGGAGGTGCAGCATGA Protein sequence : MLVKRTYTHFGFCCGLGSGAAGFNDSSLQIAQMLGNWRCIGGVDVDPAGLADFENFTGVKGTLRDLFTREQYTAFHGAEP PAGWIEATAEDIRRTAGNEDPDAVFISSPCKGASGLLPESMSLTPKYQALNELTLRCVWLMLEAWQHNPVSLIVFENVPR LASRGRHLLDQIVKLFAHYGYAVNETVHDCGEIAGLAQSRKRFLLVARHIEKVRAFLYQPQQHRLRGVGEILRRMPLAGD IELAGPMHRVPALHWKTWVRLAMVEPGKDWRSLNRLSVENGFLRDFLIVPEYRAGYLGVNRWDDPTGVIAGRNTPTNGNY SVADPRPSSSAEYAQFGVIPWERHCGVVTGQRSPGQGTFSVADPRPNWKRHSNNYRVVPFANFAGTIIAGGKGVQGGWQS VADPRVLNRKKGDAYLTGGHYGVVDWNGSAGAVSANARHDNGRWSVADTRMPAADDRLACVIRSPSNTWNRPFTTLELAA LQSMFDPEDMWQPNQDTGALEPVGKPFMLHGNNDGAWRERIGNAVPRKAGKAIADVMLSTLMLNEMGETFTLSSVPVWVR PLAIAFSMPGQQVGGAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13501.1 | site-specific DNA methylase | Not tested | PAGI-6 | Protein | 9e-173 | 64 |
