Gene Information

Name : copR (PFL_1965)
Accession : YP_259084.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : DNA-binding copper response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2198219 - 2198899 bp
Length : 681 bp
Strand : -
Note : identified by similarity to SP:Q02540; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387

DNA sequence : 
ATGAAACTGCTGATCGTCGAAGACCAACCCAAAACCGGCCACTACCTGCGCCAGGGCCTGAGCGAGGCCGGCTTCAACGC
CGAACTGGTGGCCGACGGCAGCACCGGCCAGCACCAGGCCCTGACCGGCGACTACGCTCTGCTGATTCTCGACGTGATGC
TGCCGGGTCGCAACGGCTGGCAGATCCTCCAGGCGGTGCGCAGCGCCGGGCTGGAGATGCCGGTACTGTTCCTCACCGCC
CGGGATGCCGTGCAAGACCGGGTGCACGGCCTGGAATTGGGGGCCGACGACTACCTGGTCAAGCCTTTTGCCTTCTCCGA
ACTGCTGGCCCGGGTCCGCAGCCTGCTGCGCCGGGGCAGCGCCGTGGCCCAGGAAACCAGCCTGCAACTGGCAGACCTGC
GCCTGGACCTGATCCGCCGCCGGGTAGAACGCGGCAGCCAGCGCATCGACCTGACCGCCAAGGAATTCGCCCTGCTGGAA
ATGCTCCTGCGGCGCCAGGGCGAAGTCCTGCCCAAGTCGCTGATTGCCTCCCAGGTCTGGGACATGAATTTCGACAGCGA
TACCAACGTCATCGAAGTAGCCATCCGCCGCCTGCGCCTGAAGATCGACGACGATTTCCCGAACAAACTGATCCATACCG
TACGCGGCATGGGCTACGTGCTCGAAGAGCGCCAGGCCTGA

Protein sequence : 
MKLLIVEDQPKTGHYLRQGLSEAGFNAELVADGSTGQHQALTGDYALLILDVMLPGRNGWQILQAVRSAGLEMPVLFLTA
RDAVQDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGSAVAQETSLQLADLRLDLIRRRVERGSQRIDLTAKEFALLE
MLLRRQGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRLKIDDDFPNKLIHTVRGMGYVLEERQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-51 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-50 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_259084.1 DNA-binding copper response regulator BAC0083 Protein 1e-69 71
copR YP_259084.1 DNA-binding copper response regulator BAC0638 Protein 2e-62 69
copR YP_259084.1 DNA-binding copper response regulator BAC0197 Protein 4e-62 67
copR YP_259084.1 DNA-binding copper response regulator BAC0111 Protein 6e-65 66
copR YP_259084.1 DNA-binding copper response regulator BAC0347 Protein 3e-57 60
copR YP_259084.1 DNA-binding copper response regulator BAC0308 Protein 2e-62 60
copR YP_259084.1 DNA-binding copper response regulator BAC0125 Protein 5e-59 60
copR YP_259084.1 DNA-binding copper response regulator BAC0487 Protein 4e-26 41
copR YP_259084.1 DNA-binding copper response regulator NC_002516.2.879194.p Protein 6e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_259084.1 DNA-binding copper response regulator VFG0596 Protein 2e-51 55
copR YP_259084.1 DNA-binding copper response regulator VFG1390 Protein 3e-36 45