Gene Information

Name : lolD (PFL_1962)
Accession : YP_259081.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Resistance
Product : lipoprotein-releasing system, ATP-binding protein LolD
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2194774 - 2195472 bp
Length : 699 bp
Strand : +
Note : identified by match to protein family HMM PF00005; match to protein family HMM TIGR02211

DNA sequence : 
ATGAGTGAGTTGGGCATGAGTGAAAAAGCAATCCTGAGCTGCCGCGACCTGGGCAAGTCCTATGAGGAAGGCCCGGAATC
GGTGGTGGTCCTGTCTGGCCTGCAACTGGAGCTGCACCCGGGTGAGCGAGTGGCCATCGTCGGCACTTCCGGCTCGGGCA
AGAGTACCTTGCTCAACCTGCTGGGCGGCCTGGATACGCCATCCAAGGGCAGCGTCTGGCTGGCGGGCGAGGAGCTTTCG
GCGCTGGGCGAGAAGGCCCGCGGCAAGTTGCGCAACCGCGCCCTGGGCTTCGTCTACCAGTTCCACCACCTGCTGCCGGA
GTTCACCGCGCTGGAGAACGTCTGCATGCCGCTGCTGATTGGCCGCACGCCGATCCCGGAAGCCCGTCAGCGTGCCACCG
CGCTGCTGGAGCGGGTCGGGCTCGGCCATCGCCTGGAGCACAAACCGGCCGAGCTGTCCGGTGGCGAGCGCCAGCGGGTG
GCCATTGCCCGGGCGCTGGTGAACAAGCCGGGGCTGGTGATGCTCGATGAGCCCACCGGCAACCTCGACTCGCACACGGC
CCAGGGAATTCAGGACCTGATGCTGGAGCTCAGTACCTCGATGCGCACCGCCTTCCTGGTGGTGACCCACGACATGAACC
TGGCCAGGCAGATGGACCGCGTACTGCACCTGCAAGAAGGTCACCTGGTCGCCATCTGA

Protein sequence : 
MSELGMSEKAILSCRDLGKSYEEGPESVVVLSGLQLELHPGERVAIVGTSGSGKSTLLNLLGGLDTPSKGSVWLAGEELS
ALGEKARGKLRNRALGFVYQFHHLLPEFTALENVCMPLLIGRTPIPEARQRATALLERVGLGHRLEHKPAELSGGERQRV
AIARALVNKPGLVMLDEPTGNLDSHTAQGIQDLMLELSTSMRTAFLVVTHDMNLARQMDRVLHLQEGHLVAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-28 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_259081.1 lipoprotein-releasing system, ATP-binding protein LolD NC_012469.1.7686878. Protein 1e-39 44
lolD YP_259081.1 lipoprotein-releasing system, ATP-binding protein LolD NC_008702.1.4606598. Protein 2e-32 43