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Name : aer_2 (PFL_1927) Accession : YP_259046.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : aerotaxis receptor Aer Function : - COG functional category : N : Cell motility COG ID : COG0840 EC number : - Position : 2147514 - 2149079 bp Length : 1566 bp Strand : - Note : identified by similarity to GB:AAD22405.1; match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229 DNA sequence : ATGCGTAATAACCAGCCTGTCACTCAGCGCGAACGTACCTTCCCGGCTCAACAACGGTTGATTTCCACCACCGACGCCAA AGGCGTGATCACCTACTGCAACGATGCCTTTGTCGAGATCAGTGGGTTCTCCCGTGAAGAACTGGTTCGCGCACCGCACA ACCTGGTACGTCACCCTGATGTGCCGGCGGCGGTGTTCGCGCACATGTGGGGCACCTTGAAACAAGGCTTGCCATGGATG GGCATCGTCAAGAACCGCTGCAAGACCGGCGATCACTACTGGGTCAACGCCTATGTGACACCGGTTTTCGAAGGCAGCCA GGTGGTAGGTTACGAGTCGGTCCGGGTCAAGCCCACCGCCGAACAGGTGCGCCGCGCCGAAGCCCTCTACCAGCGCATCA ACTCTGGCAAGTCGGCCATTCCCAAGCGTGACAAGTGGCTGCCTGTGCTTCAGGACTGGCTGCCGTTCATCCTGGTCAGC CAGCTGAGCTTCATGATCGGTGCCTGGCTCAACTCCCACTGGGGCTTCGCCCTGGCCGCCGCGCTCTCGGTACCCCTGGG CCTGCTGGGCCTGAGCTGGCAGCAGCGCGGCCTCAAGCGCCTGTTGCGCCTGGCCGAGCAGACCACCTCCGACCCGCTGA TCGCTCAGATGTACACCGACAGCCGCGGCGCCCAGGCCCGCCTGGAGATGTCGATCCTGAGCCAGGAAGCGCGCTTGAAG ACCTGCCTGACCCGCCTGCAGGACACGGCCGAGCACCTCAACGAGCAGGCCCGCCAGTCCGACACCCTGGCCCACAACAG CTCCAGCGGCCTGGAGCGCCAACGGGTCGAGACCGAACAGGTGGCCACCGCGGTCAACCAGATGGCCGCCACCACCCAGG AAGTGGCCAGCCACGTGCAACGCACCGCCGACGCAACCCAAGAAGCCAATCGCCTGACCGGCCGTGGCCGCGATATCGCC GGGGAAACCCGCGAAGCCATCCAGCGCCTGTCGGTGGTGGTGGGCGAAACCGGGCTGACGGTAACCCAACTGGCCAAGGA CAGTGACGAGATCGGCGGCGTTGTCGACGTGATCAAAGGCATTGCCGACCAAACCAACCTGCTGGCCCTGAACGCAGCCA TCGAAGCCGCCCGCGCCGGTGAAATGGGCCGCGGCTTTGCCGTGGTGGCCGACGAGGTGCGTCAGTTGGCACAGCGCACC AGTGAGTCCACCGGGCAGATCCATACCCTGATCGCCAAGCTGCAGCAGACAGCCGCCACCGCCGTGCAGACCATGGACGC CGGTCATCGTCAGGCCGAAGAAGGCGTGGCCCGGGTTCTGGAAGCCGACCAGGCACTGGTGGGCATCAGCGAAGCGGTGG CCAACATCACCGACATGACCACCCAGATCGCTGCCGCCACCGAAGAGCAAAGCTCGGTGGCCGAAGAGATCAGCCGCAAC ATCAGCACCATCGCGCAACTGGCGGACCAGACTTCGGAGCAGGCCCAGCATTCGGCCGAGCTCAGCGAAGCGCTGACCCG CACCGCACACACCCAGTACTCGCTGGTGGAGCGCTTCAACCGTTAA Protein sequence : MRNNQPVTQRERTFPAQQRLISTTDAKGVITYCNDAFVEISGFSREELVRAPHNLVRHPDVPAAVFAHMWGTLKQGLPWM GIVKNRCKTGDHYWVNAYVTPVFEGSQVVGYESVRVKPTAEQVRRAEALYQRINSGKSAIPKRDKWLPVLQDWLPFILVS QLSFMIGAWLNSHWGFALAAALSVPLGLLGLSWQQRGLKRLLRLAEQTTSDPLIAQMYTDSRGAQARLEMSILSQEARLK TCLTRLQDTAEHLNEQARQSDTLAHNSSSGLERQRVETEQVATAVNQMAATTQEVASHVQRTADATQEANRLTGRGRDIA GETREAIQRLSVVVGETGLTVTQLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRT SESTGQIHTLIAKLQQTAATAVQTMDAGHRQAEEGVARVLEADQALVGISEAVANITDMTTQIAAATEEQSSVAEEISRN ISTIAQLADQTSEQAQHSAELSEALTRTAHTQYSLVERFNR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0512 | NP_230163.1 | methyl-accepting chemotaxis protein | Not tested | VSP-2 | Protein | 3e-74 | 41 |
