|
Name : gabD (PFL_0185) Accession : YP_257331.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase I Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 219230 - 220672 bp Length : 1443 bp Strand : + Note : identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780 DNA sequence : ATGCAGCTCAAAGACGCCCAGTTGTTCCGCCAACAAGCCTTCATCGATGGAGCTTGGGTCGACGCGGACAACGGCCAGAC GATCAAGGTCAACAACCCCGCTACCGGTGAAATCCTCGGTACCGTACCCAAGATGGGCGCCGCCGAAACCCGCCGCGCCA TCGAGGCCGCCGACAAGGCCCTGCCGGCCTGGCGTGCCCTGACCGCCAAGGAGCGCGCCACCAAGCTGCGCCGCTGGTAT GAATTGCTGATCGAGAACCAGGACGACCTGGGTCGCCTGATGACCCTGGAGCAGGGCAAGCCGCTGGCCGAAGCCAAGGG CGAAATCGCCTACGCCGCCTCCTTCATCGAATGGTTCGCCGAAGAAGCCAAGCGCATCTACGGTGACGTGATTCCCGGCC ACCAGCCCGACAAGCGCCTGATCGTGATCAAGCAGCCGATCGGCGTGACCGCGGCCATCACCCCGTGGAACTTCCCGGCG GCGATGATCACCCGTAAAGCCGGCCCGGCCCTGGCCGCCGGTTGCACCATGGTCATCAAGCCCGCTTCGCAAACCCCGTT CTCGGCCCTGGCCCTGGTGGAACTGGCGCACCGTGCCGGCATCCCGAAAGGCGTGCTGAGCGTGGTCACCGGCAGCGCCG GCGACATCGGCGGCGAGCTCACCAGCAACCCGATCGTGCGCAAGCTGTCGTTCACCGGCTCTACCGAGATCGGTCGCCAG CTGATGGCCGAATGCGCCAAGGACATCAAGAAAGTCTCCCTGGAGCTGGGCGGCAACGCGCCGTTCATCGTGTTCGACGA CGCGGACCTGGATAAGGCCGTCGAAGGCGCGATCATCTCCAAGTACCGCAACAACGGCCAGACCTGCGTCTGCGCCAACC GCCTGTACATCCAGGACTCGGTCTACGACGCCTTCGCCGAGAAATTGAAGGCAGCAGTGGCCAAGCTGAAGATCGGCAAC GGCCTGGAAGAAGGCACCACCACTGGCCCGCTGATCGACGAAAAAGCCGTGGCCAAGGTCCAGGAACACATCGCCGACGC CCTGAAAAAAGGCGCGACCCTGCTGGCCGGCGGCAAGTCCATGGAAGGCAACTTCTTCGAGCCGACCATCCTGGTCAACG TGCCCAAGGATGCAGCCGTGGCCAAGGAAGAAACCTTTGGCCCACTGGCGCCGCTGTTCCGCTTCAAAGACGAAGCCGAA GTCATCGCCATGTCCAACGACACCGAATTCGGCCTGGCCTCGTACTTCTATGCCCGCGACCTGGGCCGTGTGTTCCGTGT GGCCGAGGCCCTGGAATACGGCATGGTCGGGGTCAACACCGGCCTGATCTCCAACGAAGTGGCGCCGTTCGGCGGCATCA AGGCCTCGGGCCTGGGCCGTGAAGGTTCCAAGTACGGGATCGAGGATTACCTGGAAATCAAATACCTCTGCCTGGGTATC TGA Protein sequence : MQLKDAQLFRQQAFIDGAWVDADNGQTIKVNNPATGEILGTVPKMGAAETRRAIEAADKALPAWRALTAKERATKLRRWY ELLIENQDDLGRLMTLEQGKPLAEAKGEIAYAASFIEWFAEEAKRIYGDVIPGHQPDKRLIVIKQPIGVTAAITPWNFPA AMITRKAGPALAAGCTMVIKPASQTPFSALALVELAHRAGIPKGVLSVVTGSAGDIGGELTSNPIVRKLSFTGSTEIGRQ LMAECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRLYIQDSVYDAFAEKLKAAVAKLKIGN GLEEGTTTGPLIDEKAVAKVQEHIADALKKGATLLAGGKSMEGNFFEPTILVNVPKDAAVAKEETFGPLAPLFRFKDEAE VIAMSNDTEFGLASYFYARDLGRVFRVAEALEYGMVGVNTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCLGI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 2e-153 | 66 |
