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Name : kdsB (PFL_1780) Accession : YP_258900.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : 3-deoxy-manno-octulosonate cytidylyltransferase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1212 EC number : 2.7.7.38 Position : 1981718 - 1982482 bp Length : 765 bp Strand : + Note : identified by match to protein family HMM PF02348; match to protein family HMM TIGR00466 DNA sequence : ATGAGCAGCGCCTTTACCGTTGTCATCCCGGCGCGCTACGCCTCCACTCGCCTGCCAGGCAAGCCGCTGCAACTGATCGC CGGCAAGCCGATGATCCAGTGGGTCTGGGAACAGGCGCGCAAGAGCAGCGCCGAGCGGGTCGTGGTGGCCACCGATGATC AGCGCATCGTCGAGGCCTGCCAGGGCTTTGGCGCCGAGGCGCTGCTGACCCGGGAAGATCACAACTCCGGCACCGACCGG CTGGCGGAAGTCGCCGCCCAGCTGGGCCTGGCCGCGGATGCGATCGTGGTCAACGTACAAGGCGACGAGCCGTTGATCCC GCCGTCGGTGATCGATCAGGTAGCGGCCAACCTGGCAGCCCACACCGAAGCGCGCATGGCCACCCTGGCCGAGCCGATCG AGGACGTGCAGACCCTGTTCAACCCCAATGTGGTCAAGGTGGTCAGCGACCTCAACGGCCTGGCCCTGACCTTCAGTCGC GCCACCTTGCCCTGGGCCCGGGATGCCTTTGCCCAGAGTCGTGAGCAACTGCCCGAAGGCGTGCCTTATCGCCGTCACAT CGGCATCTATGCCTACCGCGCCGGCTTTCTTCACGACTTCGTCAGTTGGGGCCCGTGCTGGCTGGAAAACACCGAATCCC TGGAGCAACTGCGTGCCCTGTGGCATGGCGTGCGGATCCACGTGGCCGACGCCCTGGAAGCACCGCCTACCGGCGTCGAT ACCGCCGAAGACCTTGAGCGCGTTCGGCGCCTGCTGGAGGCCTGA Protein sequence : MSSAFTVVIPARYASTRLPGKPLQLIAGKPMIQWVWEQARKSSAERVVVATDDQRIVEACQGFGAEALLTREDHNSGTDR LAEVAAQLGLAADAIVVNVQGDEPLIPPSVIDQVAANLAAHTEARMATLAEPIEDVQTLFNPNVVKVVSDLNGLALTFSR ATLPWARDAFAQSREQLPEGVPYRRHIGIYAYRAGFLHDFVSWGPCWLENTESLEQLRALWHGVRIHVADALEAPPTGVD TAEDLERVRRLLEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 5e-38 | 43 |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 7e-38 | 43 |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 2e-37 | 43 |
