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Name : lpdA_1 (PFL_1720) Accession : YP_258846.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : dihydrolipoamide dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1249 EC number : 1.8.1.4 Position : 1926050 - 1927486 bp Length : 1437 bp Strand : + Note : identified by similarity to SP:P31052; match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 DNA sequence : ATGACTCAGAAATTCGACGTGGTAGTGATTGGCGCGGGCCCAGGCGGTTATGTCGCCGCAATCAAGGCCGCACAACTCGG TTTCACCACCGCTTGCATCGAGAAGTACACCGATAAAGAGGGCAAGCTGGCCCTCGGTGGTACTTGCCTGAACGTCGGTT GCATTCCTTCCAAGGCGCTGCTGGACAGCTCCTGGAAATTCCACGAAGCCCAGGACGGTTTTGCCATCCACGGTATCAAC CACGCTGGCGTGACCATGGACGTACCAGCCATGGTGGGTCGCAAGGCCAACATCGTCAAAGGCCTGACCAGTGGTGTTGC CACCCTGTTCAAAGCCAATGGCGTCACTTCGATCCAGGGCCACGGCAAACTGCTGGCCGGCAAGAAAGTCGAAGTCACCA AGCCTGACGGTTCGGTTGAAGTGATCGAAGCCGAAAACGTGATCCTGGCTCCAGGCTCGCGTCCGATCGACATTCCACCG GCTCCGGTCGACCAGAATGTGATCGTCGATTCCACCGGCGCTCTGGAATTCCAATCCGTACCAAAACGCCTGGGCGTGAT CGGCGCTGGCGTCATCGGCCTGGAACTGGGTTCGGTATGGTCGCGCCTGGGTGCGCAAGTGACTGTCCTGGAAGCCCTGG ACACCTTCCTGATGGCAGCCGACACCGCTGTTTCCAAGGAAGCGCTGAAAACCCTGACCAAGCAAGGCCTGGACATCAAG CTGGGCGCTCGCGTGACCGGCTCCAAGGTCAACGGCGAAGAAGTCGTGGTCACCTACACCGATGCCAATGGCGAGCAGAC CATCACTTTCGACAAGCTGATCGTTGCCGTTGGTCGCCGCCCGGTGACCACCGACCTGCTGGCCGCCGATTGCGGCGTGA CCCTCGACGAGCGCGGTTTCGTGCACGTTGACGATCATTGCGCTACCACCGTGCCGGGCGTCTACGCCATCGGTGACGTG GTGCGCGGCATGATGCTGGCTCACAAGGCCTCGGAAGAGGGCATCATGGTTGCCGAGCGCATCAAGGGCCACAAAGCCCA GATGAACTATGACCTGATCCCTTCGGTTATCTATACTCACCCGGAAATTGCATGGGTCGGTAAAACCGAGCAGGCCTTGA AAGCTGAAGGCGTTGAAGTTAACGTCGGCACCTTCCCGTTTGCCGCCAGCGGCCGTGCCATGGCAGCCAACGACACCGGT GGTTTCGTCAAAGTCATCGCCGATGCCAAGACTGACCGCGTATTGGGCGTCCACGTGATTGGCCCAAGCGCTGCGGAACT GGTTCAGCAAGGTGCGATCGGCATGGAATTCGGCACCAGCGCCGAAGACCTGGGCATGATGGTTTTCTCCCATCCGACCC TGTCCGAAGCCCTGCACGAAGCAGCTCTGGCTGTGAATGGCACTGCCATCCACATTGCCAACCGCAAGAAACGCTAA Protein sequence : MTQKFDVVVIGAGPGGYVAAIKAAQLGFTTACIEKYTDKEGKLALGGTCLNVGCIPSKALLDSSWKFHEAQDGFAIHGIN HAGVTMDVPAMVGRKANIVKGLTSGVATLFKANGVTSIQGHGKLLAGKKVEVTKPDGSVEVIEAENVILAPGSRPIDIPP APVDQNVIVDSTGALEFQSVPKRLGVIGAGVIGLELGSVWSRLGAQVTVLEALDTFLMAADTAVSKEALKTLTKQGLDIK LGARVTGSKVNGEEVVVTYTDANGEQTITFDKLIVAVGRRPVTTDLLAADCGVTLDERGFVHVDDHCATTVPGVYAIGDV VRGMMLAHKASEEGIMVAERIKGHKAQMNYDLIPSVIYTHPEIAWVGKTEQALKAEGVEVNVGTFPFAASGRAMAANDTG GFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIGMEFGTSAEDLGMMVFSHPTLSEALHEAALAVNGTAIHIANRKKR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SE0077 | NP_763632.1 | dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase E3 | Not tested | SCCpbp4 | Protein | 6e-78 | 41 |
