Gene Information

Name : fliP (PFL_1651)
Accession : YP_258777.2
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1852734 - 1853483 bp
Length : 750 bp
Strand : +
Note : identified by match to protein family HMM PF00813; match to protein family HMM TIGR01103

DNA sequence : 
ATGCCGTTGCGCATCATCTTGACGTTGGCACTGATGCTGGCGGCGCCGCTGGCGTTGGCGGCGGACCCGTTGTCGATCCC
GGCGATCACCCTTGGCACCAATGCCAGCGGCCAGCAGGAGTACTCGGTCAGCCTGCAGATCCTGCTGATCATGACGGCGC
TGAGCTTCATTCCAGCGTTCGTCATGCTGATGACCAGCTTCACCCGGATCATCATCGTCTTCTCGATCCTGCGTCAGGCC
CTGGGCCTGCAGCAGACCCCGTCGAACCAGATCCTCACCGGCATGGCGCTGTTTCTTACCATGTTCATCATGGCGCCGGT
GTTCGACCGGGTGAACCAGGACGCCTTGCAGCCTTACCTGGCGGAAAAACTCACCGCCCAGGACGCCGTGGCCAAGGCTC
AGGTGCCGATCAAGGACTTCATGCTGGCGCAGACCCGCAGCAGCGACCTGGAGCTGTTCATGCGCCTGTCCAAGCGCACC
GACATCGCCAGCCCTGACCAGGCGCCGCTGACCATCCTGGTCCCGGCCTTCGTCACCTCCGAGCTCAAGACTGCGTTCCA
GATCGGCTTCATGATCTTCATTCCGTTCCTGATCATCGACCTGGTGGTGGCCAGTGTGCTGATGGCCATGGGCATGATGA
TGCTCTCGCCCCTGATCATTTCCCTGCCGTTCAAGATCATGCTGTTCGTCCTCGTGGACGGTTGGGCGTTGATCATCGGT
ACCCTGGCGGGCAGTTTCGGTGGTGTTTAA

Protein sequence : 
MPLRIILTLALMLAAPLALAADPLSIPAITLGTNASGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQA
LGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRSSDLELFMRLSKRT
DIASPDQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIG
TLAGSFGGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-29 43
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-29 43
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-29 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-33 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 6e-31 42
escR AAK26700.1 EscR Virulence LEE Protein 5e-33 42
escR AAL57527.1 EscR Virulence LEE Protein 5e-33 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 5e-33 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 7e-33 42
escR CAI43889.1 EscR protein Virulence LEE Protein 5e-33 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 7e-33 42
escR AAC31528.1 L0049 Virulence LEE Protein 5e-33 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 6e-33 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 5e-33 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 6e-33 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-32 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-32 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-32 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-33 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 5e-33 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 5e-33 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 5e-23 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 4e-23 41
escR AAC38369.1 EscR Virulence LEE Protein 4e-32 41
unnamed AAL06354.1 EscR Virulence LEE Protein 3e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_258777.2 flagellar biosynthesis protein FliP VFG1259 Protein 2e-90 86
fliP YP_258777.2 flagellar biosynthesis protein FliP VFG2016 Protein 2e-65 62
fliP YP_258777.2 flagellar biosynthesis protein FliP VFG2338 Protein 5e-60 60
fliP YP_258777.2 flagellar biosynthesis protein FliP VFG2494 Protein 5e-63 60
fliP YP_258777.2 flagellar biosynthesis protein FliP VFG0394 Protein 2e-33 43
fliP YP_258777.2 flagellar biosynthesis protein FliP VFG0827 Protein 3e-33 42
fliP YP_258777.2 flagellar biosynthesis protein FliP VFG0519 Protein 2e-33 41
fliP YP_258777.2 flagellar biosynthesis protein FliP VFG0044 Protein 3e-34 41
fliP YP_258777.2 flagellar biosynthesis protein FliP VFG0188 Protein 5e-34 41
fliP YP_258777.2 flagellar biosynthesis protein FliP VFG0715 Protein 2e-32 41