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Name : lysS (PFL_1138) Accession : YP_258269.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1305417 - 1306919 bp Length : 1503 bp Strand : + Note : identified by similarity to SP:P14825; match to protein family HMM PF00152; match to protein family HMM PF00587; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGAGCGACCAACAACTCGACCCGCAAGCCCTGCAACAGGAAGAAAACTCCCTGATCGCCCTGCGCAAGGAAAAGCTTGC TGCCGAGCGCGCCAAGGGCAATGCCTTCCCGAACGACTTCCGCCGCGAAAACTACTGCGAAGATCTGCAGAAGAAATACG CGGACAAGACCAAGGAAGAGCTCGCAGAGGCTGCAATCCCGGTCAAGGTTGCCGGTCGCATCATGCTCAACCGTGGCTCG TTCATGGTGATCCAGGACATGACCGGTCGCATTCAGGTCTACGTCAACCGTAAAACCCTGTCCGAAGAAACCCTGGCCTC CGTCAAGACCTGGGACATGGGCGACATCATCGCTGCCGAAGGCACTCTGGCCCGTTCCGGCAAGGGTGACCTGTACGTTG AAATGACCAATGTGCGCCTGCTGACCAAGTCGCTGCGCCCGCTGCCGGACAAGCACCACGGCCTGACCGACACCGAGCAG CGCTACCGTCAGCGCTACGTCGACCTGATCGTCAACGAAGAAGTACGCCAGACTTTCCGCGTGCGTTCGCAAGTGATCGC CCACATCCGCAGCTTCCTGATGAAGCGCGACTTCCTCGAAGTCGAAACGCCGATGCTGCAGACCATCCCTGGCGGCGCTG CGGCCAAGCCGTTTGAAACCCACCACAACGCGCTGGACATGGAAATGTTCCTGCGTATCGCCCCTGAGCTGTATCTGAAG CGCCTGGTGGTTGGCGGTTTCGAGAAAGTGTTCGAGATCAACCGCAACTTCCGTAACGAAGGCGTTTCGACCCGTCACAA CCCTGAATTCACCATGTTGGAGTTCTACCAGGCTTACGCCGACTACGAAGACAACATGGACCTGACCGAAGAACTGTTCC GCGAACTGGCGCAGTTGGTCCTGGGCAGCACCGACGTGCCGTACGGCGACAAGGTGTTCCACTTCGGCGAGCCGTTCGCG CGCCTGTCGGTGTTCGACTCGATCCTCAAGTACAACCCCGAACTGACCGCTGATGACCTGAACGACATCGACAAGGCTCG CGCCATCGCCAAGAAGGCCGGTGCCAAGGTGCTGGGCTTCGAAGGCCTGGGCAAGTTGCAGGTGATGATTTTCGAGGAAC TGGTGGAGCACAAGCTGGAGCAGCCGCACTTCATTACCCAGTACCCGTTCGAAGTGTCGCCGCTGGCCCGTCGCAACGAC GATAACCCCAACGTCACCGACCGTTTCGAGCTGTTCATTGGTGGTCGCGAAATCGCCAACGCCTACTCCGAGTTGAACGA CGCGGAAGACCAGGCAGAGCGCTTCATGGCCCAGGTGGCGGACAAGGACGCCGGTGATGACGAAGCCATGCACTACGACG CCGACTTCGTCCGTGCCCTGGAATACGGCATGCCGCCCACCGCCGGCGAGGGCATCGGTATCGACCGCCTGGTGATGTTG CTGACCAACTCGCCGTCGATTCGCGACGTGATCCTGTTCCCGCACATGCGGCCGCAAGCTTAA Protein sequence : MSDQQLDPQALQQEENSLIALRKEKLAAERAKGNAFPNDFRRENYCEDLQKKYADKTKEELAEAAIPVKVAGRIMLNRGS FMVIQDMTGRIQVYVNRKTLSEETLASVKTWDMGDIIAAEGTLARSGKGDLYVEMTNVRLLTKSLRPLPDKHHGLTDTEQ RYRQRYVDLIVNEEVRQTFRVRSQVIAHIRSFLMKRDFLEVETPMLQTIPGGAAAKPFETHHNALDMEMFLRIAPELYLK RLVVGGFEKVFEINRNFRNEGVSTRHNPEFTMLEFYQAYADYEDNMDLTEELFRELAQLVLGSTDVPYGDKVFHFGEPFA RLSVFDSILKYNPELTADDLNDIDKARAIAKKAGAKVLGFEGLGKLQVMIFEELVEHKLEQPHFITQYPFEVSPLARRND DNPNVTDRFELFIGGREIANAYSELNDAEDQAERFMAQVADKDAGDDEAMHYDADFVRALEYGMPPTAGEGIGIDRLVML LTNSPSIRDVILFPHMRPQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-134 | 59 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-77 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_258269.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 4e-134 | 59 |
