Gene Information

Name : hom (PFL_1103)
Accession : YP_258234.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Unknown
Product : homoserine dehydrogenase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0460
EC number : 1.1.1.3
Position : 1258575 - 1259879 bp
Length : 1305 bp
Strand : +
Note : identified by similarity to SP:P29365; match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447

DNA sequence :
GTGAATCCGGTCAAAGTAGGCATCTGTGGGCTGGGTACTGTCGGTGGCGGTACCCTAAACGTACTTCAGCGCAACGCCGA
GGAGATTGCCCGCCGTGCCGGGCGTGGAATCGAAGTAGCGCAGATTGCTACCCGTACGCCAAAGCCGCAGTTCCAAACGA
CCGGTATTGCGATTACCAACGATGTCTTCGCCGTGGCCACCAACCCTGAAATCGATATCGTCATCGAGCTGGTGGGCGGC
TACACCGTGGCCCGTGACCTGGTGCTCAAGGCCATCGAGAACGGCAAGCACGTGGTCACCGCGAACAAGGCGCTGATCGC
CGTGCACGGCAACGAAATCTTCGCCAAGGCCCAGGAGAAGGGCGTGATCGTCGCTTTCGAAGCCGCCGTTGCCGGTGGCA
TCCCGGTGATCAAGGCGATCCGCGAAGGCCTCTCGGCCAACCGTATCAACTGGCTGGCGGGGATCATCAACGGCACCGGT
AACTTCATCCTCTCGGAAATGCGCGAGAAGGGCCGCACCTTTGAAGACGTGCTGGCCGAAGCCCAGGCCCTGGGCTACGC
CGAAGCCGACCCGACCTTCGACGTCGAAGGCATCGATGCCGCGCACAAGCTGACCATCCTGGCCTCCATCGCCTTTGGTA
TCCCGCTGCAGTTCGACAAGGCCTACACCGAAGGCATCACCAAGCTCACCACCGCCGACGTGAACTACGCCGAGGCCCTG
GGCTACCGCATCAAGCACCTGGGTGTGGCGCGCCGCACCGAGGCCGGTATCGAGCTGCGGGTGCACCCGACCCTGATTCC
GGCCGATCGCCTGATCGCCAACGTCAACGGTGTGATGAACGCGGTCATGGTCAATGGCGATGCTGCCGGTTCGACCCTGT
TCTACGGCGCCGGCGCGGGCATGGAGCCGACCGCTTCCTCGGTGGTGGCCGACCTGGTGGACGTGGTTCGCGCCATGACC
AGTGACCCGGAAAACCGCGTGCCGCACCTGGCGTTCCAGCCTGACTCGCTATCGGATCATCCGATCCTGCCGATCGAGTC
CTGCGAGAGCGCCTACTACCTGCGCATCCAGGCCAAGGATCACCCGGGCGTACTGGCCCAGGTGGCGAGCATCCTCTCGG
AGCGCGGCATCAACATCGAATCGATCATGCAGAAGGAAGTGGAAGAGCAGGACGGCCTGGTGCCGATGATCCTGCTGACC
CACCGTGTTCTGGAGCAGCACATCAACGATGCGATCACCGCCCTGGAGGCCCTGCAGGGCGTCGTTGGCCCGGTGGTGCG
TATCCGCGTCGAACATTTGAATTAA

Protein sequence :
MNPVKVGICGLGTVGGGTLNVLQRNAEEIARRAGRGIEVAQIATRTPKPQFQTTGIAITNDVFAVATNPEIDIVIELVGG
YTVARDLVLKAIENGKHVVTANKALIAVHGNEIFAKAQEKGVIVAFEAAVAGGIPVIKAIREGLSANRINWLAGIINGTG
NFILSEMREKGRTFEDVLAEAQALGYAEADPTFDVEGIDAAHKLTILASIAFGIPLQFDKAYTEGITKLTTADVNYAEAL
GYRIKHLGVARRTEAGIELRVHPTLIPADRLIANVNGVMNAVMVNGDAAGSTLFYGAGAGMEPTASSVVADLVDVVRAMT
SDPENRVPHLAFQPDSLSDHPILPIESCESAYYLRIQAKDHPGVLAQVASILSERGINIESIMQKEVEEQDGLVPMILLT
HRVLEQHINDAITALEALQGVVGPVVRIRVEHLN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00305 YP_008207770.1 Homoserine dehydrogenase Not tested AbaR25 Protein 2e-110 59
BJAB0868_00309 YP_008211635.1 Homoserine dehydrogenase Not tested AbaR26 Protein 2e-110 59