|
Name : xerD (PFL_1101) Accession : YP_258232.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : site-specific tyrosine recombinase XerD Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 1256663 - 1257559 bp Length : 897 bp Strand : + Note : identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225 DNA sequence : ATGCCTGCCATCGACCACCCCCTGATCGACCGTTTTCTCGACGCCCTGTGGTTGGAGAAAGGCCTGTCCGACAACACGCG CGACGCCTATCGCAGTGACCTGGCGTTGTTCAACGGCTGGTTGCAGGAGCAGGGGCTGGAGTTGCCGCGGGCCGGGCGCG AGCTGATCCTCGATCACCTGGCCTGGCGCGTGGAGCAAGCCTACAAGCCCCGCTCGACAGCGCGATTCCTCTCGGGCGTG CGTGGTTTCTATCGCTATCTGCTGCGGGAAAAGCTGATTGAAATCGATCCCACCTTGCAGATCGACATGCCGCAACTGGG GCGTCCGTTGCCCAAGTCGCTGTCGGAGGCGGATGTGGAAGCGCTGCTGGCCGCGCCGGACCTGAGCGAGGCCATCGGCC AGCGCGACCGGGCCATGCTCGAAGTGCTCTATGCCTGCGGCCTGCGGGTTACCGAGCTGATCAGCCTGACCCTGGAGCAG GTCAACCTGCGCCAGGGCGTGCTGCGGGTCATGGGCAAGGGCAGCAAGGAGCGCCTGGTGCCCATGGGCGAGGAGGCGAT TGTCTGGGTCGAGCGCTACATGCGTGATGCTCGTGCCGAGCTGCTGGGCGGGCGCCCCAGCGACGTGCTGTTCCCCAGCC TGCGTGGCGAGCAGATGACCCGCCAGACCTTCTGGCATCGGATCAAGCACCAGGCCAAGGTCGCCGGGATCGGCAAGGCG CTGTCGCCCCACACCTTGCGCCATGCCTTCGCTACCCATCTGCTCAATCACGGCGCCGACCTGCGAGTGGTGCAGATGCT GTTGGGCCATAGCGATCTGTCCACCACCCAGATCTATACCCATGTGGCCCGCGCCCGGCTGCAGGATCTGCACGCCAAGC ACCATCCGCGCGGTTGA Protein sequence : MPAIDHPLIDRFLDALWLEKGLSDNTRDAYRSDLALFNGWLQEQGLELPRAGRELILDHLAWRVEQAYKPRSTARFLSGV RGFYRYLLREKLIEIDPTLQIDMPQLGRPLPKSLSEADVEALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQ VNLRQGVLRVMGKGSKERLVPMGEEAIVWVERYMRDARAELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKA LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00307 | YP_008207772.1 | Site-specific recombinase XerD | Not tested | AbaR25 | Protein | 3e-66 | 54 |
| BJAB0868_00311 | YP_008211637.1 | Site-specific recombinase XerD | Not tested | AbaR26 | Protein | 3e-66 | 54 |
