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Name : nagE (PFL_1078) Accession : YP_258209.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : PTS system N-acetylglucosamine-specific transporter subunit IIBC Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG1263 EC number : 2.7.1.69 Position : 1232306 - 1234012 bp Length : 1707 bp Strand : - Note : identified by similarity to GB:AAG07148.1; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998 DNA sequence : ATGTACCAGTATTTCATCGAGGGCCTGCAACGCCTCGGCCGGGCGCTGATGCTGCCCATCGCCATCTTGCCCATCGCCGG TCTGCTGCTGCGCCTGGGCGACACCGACCTGCTGAACATCGCGATCATCCACGATGCCGGGCAGTCGATCTTCGGCAACC TGGCGCTGATCTTCGCCATCGGTATCGCCGTCGGCTTTGCCAAGGACAACAATGGCACCGCCGGGCTGGCCGGGGCCATT GGCTACCTGGTAATGATCTCGACCCTCAAGGTGCTGGACGCCAGCATCAACATGGGCATGCTCGCCGGGATCATCAGCGG GCTGATGGCCGGCGCGCTGTACAACCGCTTCAAGGACATCAAGCTGCCGGAGTACCTGGCGTTTTTCGGCGGCCGGCGCT TCGTGCCCATCGCCACCGGTTTCACCGCCGTGGGCCTGGGGGTGGCGTTCGGCCTGATCTGGCCGCCGATCCAGCACGGC ATCAACAGCTTCGGCCAGTTGCTGCTGGAGAGCGGCAGCTTCGGCGCCTTTGTCTTCGGCGTGTTCAACCGGCTGCTGAT CGTCACCGGCCTGCACCACATCCTCAACAACATGGCCTGGTTCATCTTCGGCAGCTTCACCGACCCGAGCACCGGCGCCG TGGTCACCGGCGACCTGACCCGCTACTTTGCCGGCGACCCCAAGGGCGGCCAGTTCATGACCGGGATGTTCCCGATGATG CTGTTCGGCCTGCCCGCCGCCTGCCTGGCGATGTACCGCAACACACCGCCGGAACGGCGCAAGGTAATGGGCGGGATCTT CCTGTCCATGGCCCTGACATCCTTCCTCACCGGGGTCACCGAGCCGATCGAATTCGCCTTCATGTTCCTTGCCCCCCTGC TGTACCTGGTGCATGCCCTGCTCACCGGGCTGGCCATGGCCCTGACCAACCTGCTGAACATCCACCTGGGCTTTACCTTT TCCGGCGGCGCCATCGACATGGCCCTGGGCTGGGGCCGCTCCACCAACGGCTGGAAGGTGTTTCCGGTGGGCCTGCTGTA CGCGGTGGTGTACTACCTGGTGTTCGATTTCTGCATCCGTCGCTTCAACCTCAAGACCCCGGGCCGTGAAGACAGCCCCT CCAGCGAAAAGACTGAACTGAGCGTCGACCAGCGCGCCGCAGCCTACATCAAGGCCCTGGGTGGCGCCGGCAACCTGCTT ACCGTCGGTGCCTGCACCACGCGCCTGCGCCTGGAGCTGGCAGACCGCAACCTGGCTTCGGACAGCGAGCTCAAGGCCCT GGGCGCCATGGCCGTGGTGCGCCCCGGCAAGGGCGGCAGCTTGCAGGTGGTGGTGGGGCCGCTGGCAGACAGCATCGCCG ACGAGATCCGCCTGGCGTCACCCGTTTCGGCCAGGGCTGCGGTGGCACAGGCGCCTGTTGAAGAACCCCCGCAGGTCGAC ATTTCCATCCACGAAGCCCAGCAGTGGCTCAACGCCCTGGGCGGTCGGGACAACCTGCTGCAGATGGACTGTGTGGCGCT GACCCGGTTGCGAGTGCGAGTGAACAATAGCCGCAGCCTGTCGGAGCCGATGCTCAAGGGGCTGGGCTGCCAGGGCATGC GGCGTATGGAGGGGGACGTCTGGCACGTGCTGATTGGCGAAAAGGCCGGGGGCTTGCAGGTGGCGCTGACGGGCTTGCTG CACCAAGAGGTCGGCGCAGGTGCTTGA Protein sequence : MYQYFIEGLQRLGRALMLPIAILPIAGLLLRLGDTDLLNIAIIHDAGQSIFGNLALIFAIGIAVGFAKDNNGTAGLAGAI GYLVMISTLKVLDASINMGMLAGIISGLMAGALYNRFKDIKLPEYLAFFGGRRFVPIATGFTAVGLGVAFGLIWPPIQHG INSFGQLLLESGSFGAFVFGVFNRLLIVTGLHHILNNMAWFIFGSFTDPSTGAVVTGDLTRYFAGDPKGGQFMTGMFPMM LFGLPAACLAMYRNTPPERRKVMGGIFLSMALTSFLTGVTEPIEFAFMFLAPLLYLVHALLTGLAMALTNLLNIHLGFTF SGGAIDMALGWGRSTNGWKVFPVGLLYAVVYYLVFDFCIRRFNLKTPGREDSPSSEKTELSVDQRAAAYIKALGGAGNLL TVGACTTRLRLELADRNLASDSELKALGAMAVVRPGKGGSLQVVVGPLADSIADEIRLASPVSARAAVAQAPVEEPPQVD ISIHEAQQWLNALGGRDNLLQMDCVALTRLRVRVNNSRSLSEPMLKGLGCQGMRRMEGDVWHVLIGEKAGGLQVALTGLL HQEVGAGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ef0067 | AAM75272.1 | EF0067 | Not tested | Not named | Protein | 1e-58 | 42 |
| APECO1_2642 | YP_859416.1 | PTS system, glucose-specific IIBC component | Not tested | Not named | Protein | 2e-58 | 41 |
