Gene Information

Name : y1941 (y1941)
Accession : NP_669256.1
Strain : Yersinia pestis KIM
Genome accession: NC_004088
Putative virulence/resistance : Unknown
Product : transposase/IS protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 2140276 - 2141058 bp
Length : 783 bp
Strand : -
Note : IS100; orfB; residues 1 to 260 of 260 are 100.00 pct identical to residues 1 to 260 of 260 from GenPept : >gb|AAC69770.1| (AF074612) transposase [Yersinia pestis]

DNA sequence :
GTGATGATGGAACTGCAACATCAACGACTGATGGCGCTCGCCGGGCAGTTGCAACTGGAAAGCCTTATAAGCGCAGCGCC
TGCGCTGTCACAACAGGCAGTAGACCAGGAATGGAGTTATATGGACTTCCTGGAGCATCTGCTTCATGAAGAAAAACTGG
CACGTCATCAACGTAAACAGGCGATGTATACCCGAATGGCAGCCTTCCCGGCGGTGAAAACGTTCGAAGAGTATGACTTC
ACATTCGCCACCGGAGCACCGCAGAAGCAACTCCAGTCGTTACGCTCACTCAGCTTCATAGAACGTAATGAAAATATCGT
ATTACTGGGGCCATCAGGTGTGGGGAAAACCCATCTGGCAATAGCGATGGGCTATGAAGCAGTCCGTGCAGGTATCAAAG
TTCGCTTCACAACAGCAGCAGATCTGTTACTTCAGTTATCTACGGCACAACGTCAGGGCCGTTATAAAACGACGCTTCAG
CGTGGAGTAATGGCCCCCCGCCTGCTCATCATTGATGAAATAGGCTATCTGCCGTTCAGTCAGGAAGAAGCAAAGCTGTT
CTTCCAGGTCATCGCTAAACGTTACGAAAAGAGCGCAATGATCCTGACATCCAATCTGCCGTTCGGGCAGTGGGATCAAA
CGTTCGCCGGTGATGCAGCACTGACCTCAGCGATGCTGGACCGTATCTTACACCACTCACATGTCGTTCAAATCAAAGGA
GAAAGCTATCGACTCAGACAGAAACGAAAGGCCGGGGTTATAGCAGAAGCTAATCCTGAGTAA

Protein sequence :
MMMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDF
TFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQ
RGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKG
ESYRLRQKRKAGVIAEANPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 2e-120 100
unnamed CAA21402.1 - Not tested HPI Protein 2e-120 100
api84 CAF28558.1 putative transposase Not tested YAPI Protein 2e-120 100
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 5e-121 100
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 2e-120 100
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 5e-121 100
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 2e-120 100
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 2e-120 100
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 2e-120 100
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 2e-120 100
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 4e-86 100
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 6e-121 99
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 1e-119 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
y1941 NP_669256.1 transposase/IS protein VFG1515 Protein 9e-121 100
y1941 NP_669256.1 transposase/IS protein VFG1627 Protein 9e-121 100
y1941 NP_669256.1 transposase/IS protein VFG1606 Protein 9e-121 100
y1941 NP_669256.1 transposase/IS protein VFG1460 Protein 2e-86 100
y1941 NP_669256.1 transposase/IS protein VFG1663 Protein 6e-120 99