|
Name : lysS (BUsg422) Accession : NP_660755.1 Strain : Buchnera aphidicola Sg Genome accession: NC_004061 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 477625 - 479136 bp Length : 1512 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGATTAAAAAAACAGATTTAAATAATAATATTTTTCAAAAAGAAAAACAAATAAGAAAAGAAAAACTGATTAATATGAA AAAAAACGGATTTTCTTTTCCAAATAGTTTCAAAAAAAACACTAACTCTATCAAAATACATCAAGAATATGAAAATAAAA CAATTAATGAACTTAAAGTTTTAAATGTTGAAGTTACGATTGCAGGTCGTATGATACAACGAAGAATTATGGGAAAAGCA TCTTTTTTTACATTACAAGATATGGAAGGAAAAATACAAATTTATACAAGAGAAAAAGAGATTACATCAGATTTTTACAA CAATCATTTTAAAAAATGGGATATTGGAGATATTCTAGGAATAGAAGGAATATTGTTTAAAACAAAAACAGGAGAATTAT CTATTTTTTCTAAAAAATTAAAAATATTAACTAAATCTTTAAGACCCTTACCTGATAAATTTCACGGATTATCTAACCAA GAAAAACGTTATAGAAAAAGATACTTAGATTTAATTAGTAATAATCAATTATTTAATATTTTTAAAAATCGTTCTAAAAT AATCAGGTTCATTCGAAATTTTATGATAGAAAACAATTTTTTAGAAGTAGAAACTCCTATGTTACATAATATTCCTGGTG GAGCAAATGCTCGACCTTTTATTACTTATCATAATGAAATTAATGAAGAAATGTACTTAAGAATAGCACCTGAATTATAT TTAAAACAACTAATTGTGGGTGGTTTTGAACGTATTTTTGAACTCAATCGAAATTTTCGTAATGAAGGAGTTTCTGCTCG ACATAATCCAGAATTTACTATGATGGAAGCATATATAGCTTATTCTAATTATGAAGATATGATGAATTTTACTGAAAATT TACTAAAAAATATAATCAAATCAATTTGTGGAAAAAGTGAAATAAAATATAATAAGTATTACTTAAATTTTAATATTCCG TTTAAAAAATTAACGATGAAAGAATCTATTTTGCAATTTAATTCAAATATTTGTTTATCAGATTTAAAAAATTTACAAAA AATTAAAAAAATTGCAAATAATATTGGTATCGAAATAAAAGACAATTGGAATATAGGTTATATAGAAAATGAAATTTTTG AAAAAACAGTAGAAAAAAACCTTATTCAACCTACTTTTATTACTGAATATCCAGTGGAAGTTTCTCCCCTAGCTAGACGT AACGATTTTAATTCTAATGTAACAGATAGATTTGAACTTTTTATTGCTGGATATGAAATTGGAAATGGATTTTCTGAATT AAACGATTCAGAAGATCAAAAAAATAGATTTTTAAATCAAATGAAAATAGCAGAAAAAGAAAAAAATAAAGATATGTTGT ATGATGAAAATTACATAGAGGCATTAAAATACGGTTTACCTCCTACTTCAGGTTTAGGAATTGGAATTGATCGTCTGATT ATGATATTAACTAATCAAATAAGCATTCGGGACGTTATTTTATTTCCAACATTACGTTCATTTAAAAAATAA Protein sequence : MIKKTDLNNNIFQKEKQIRKEKLINMKKNGFSFPNSFKKNTNSIKIHQEYENKTINELKVLNVEVTIAGRMIQRRIMGKA SFFTLQDMEGKIQIYTREKEITSDFYNNHFKKWDIGDILGIEGILFKTKTGELSIFSKKLKILTKSLRPLPDKFHGLSNQ EKRYRKRYLDLISNNQLFNIFKNRSKIIRFIRNFMIENNFLEVETPMLHNIPGGANARPFITYHNEINEEMYLRIAPELY LKQLIVGGFERIFELNRNFRNEGVSARHNPEFTMMEAYIAYSNYEDMMNFTENLLKNIIKSICGKSEIKYNKYYLNFNIP FKKLTMKESILQFNSNICLSDLKNLQKIKKIANNIGIEIKDNWNIGYIENEIFEKTVEKNLIQPTFITEYPVEVSPLARR NDFNSNVTDRFELFIAGYEIGNGFSELNDSEDQKNRFLNQMKIAEKEKNKDMLYDENYIEALKYGLPPTSGLGIGIDRLI MILTNQISIRDVILFPTLRSFKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-128 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | NP_660755.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-128 | 54 |
