Gene Information

Name : RHE_PD00059 (RHE_PD00059)
Accession : NP_659978.1
Strain :
Genome accession: NC_004041
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 68004 - 68657 bp
Length : 654 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGGAACAGAGCTTTCCTCTTGCCCAGAGCCTCGCGGCAATGGCGGCGATCTCGATGCTGCCGGTCATTGCCGTGATCGC
AACCTCCTTCACCAAGATTTCAGTCGTCCTGCTGATCGTGCGCAATGCGATCGGCATCCAGCAGACGCCGCCGAATCTCC
TGGTCTTTGCGATTGCCATCGTGCTCTCGGCCTTCGTGATGAACCCGGTGCTGCAAAACAGCTGGCAATTGCTGCTCGCC
CATAGCGGCGATTTCGGCACGGTCAGTGGCATGGCGGACGGCATGATCAAAGTGGCAGCGCCGCTGAAGGATTTCATGCT
GAAATTTTCCGACGCCGAGGTGCGCGACTTTTTCGTGCAGGCGTCGCAGAAGATCTGGGCAAACGCGCCGGCAACCCCCA
TTGCCTCCGACGATATCACCGTGCTGACGCCAAGCTTCCTCGTTTCGGAACTGACGCGGGCCTTTGAAATCGGATTTCTG
ATTTATCTGCCCTTCCTGATGATCGACTTCGCCGTCTCCGCCATTCTGGTGGCGCTCGGCATGCAGATGATGTCCCCGAC
CGTGGTGTCGACACCGCTGAAGCTGCTGCTGTTCGTCTCGATCGACGGCTGGCGGCGATTGCTGGAAGGTCTGGTGCTGT
CCTATGCGCAGTGA

Protein sequence : 
MEQSFPLAQSLAAMAAISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPVLQNSWQLLLA
HSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATPIASDDITVLTPSFLVSELTRAFEIGFL
IYLPFLMIDFAVSAILVALGMQMMSPTVVSTPLKLLLFVSIDGWRRLLEGLVLSYAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-38 45
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-38 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-38 44
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-39 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-39 44
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-39 44
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-38 44
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-38 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-38 44
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-38 44
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 9e-36 43
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-36 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 7e-41 43
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-36 43
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 9e-37 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 8e-35 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 8e-35 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-32 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-32 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-32 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-32 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 7e-38 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 7e-38 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-32 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 3e-40 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RHE_PD00059 NP_659978.1 type III secretion system protein VFG0044 Protein 9e-48 51
RHE_PD00059 NP_659978.1 type III secretion system protein VFG0394 Protein 4e-38 46
RHE_PD00059 NP_659978.1 type III secretion system protein VFG0188 Protein 5e-40 45
RHE_PD00059 NP_659978.1 type III secretion system protein VFG0519 Protein 9e-33 42