Gene Information

Name : kdpB (XAC0757)
Accession : NP_641110.1
Strain : Xanthomonas axonopodis 306
Genome accession: NC_003919
Putative virulence/resistance : Unknown
Product : potassium-transporting ATPase subunit B
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2216
EC number : 3.6.3.12
Position : 898480 - 900528 bp
Length : 2049 bp
Strand : +
Note : One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions

DNA sequence :
ATGTCTACGATCGATACGACTGAAAAACGCGAGCGCGGTGACGCAGCGTTGTTCGATGCCGCCGTGCTGGTTGCGGCGAT
GCGTGCGGCGTTCGCCAAGTTGGCGCCGCGGCATCTGCTGCGCAGCCCGGTGATGGCGGTGGTGATGGGCGGCACGGTGC
TGGCAGCGGTGATCACCGCCAGCGGGCACTCGCATGCCGGCTTCGGCTGGGCGGTGACGGCGATTCTGTTCGTCACCGTG
TTGTTCGGCAATTTTGCCGAAGCCATTGCCGAAGCGCGTGGGCGTGGGCAGGCCGCCTCGTTGCGGCGTGCACGCAAGGA
CCTGGTGGCACGCAGGGTGGAAACCGCACTCGGTGGCCGCGAAACGCGCGTGCCGGCAGCGGAGTTGCGCCCGGGCGATT
ACGTCATGGTGTCCGAAGGCGAATTCGTGCCGGCCGATGGCGAGATCGTGCGGGGTGTTGCCACCATCAACGAAGCGGCG
GTGACCGGCGAATCGGCGCCGGTGCTGCGCGAGGCCGGCACCGATCGCAGCGGCGTCATCGGTGGCACCCGGGTGCTCTC
CGACGAGATCGTGTTCAAGGTCACCGCCGAGCCGGGGCACAGCTTTCTCGATCGCATGATCGCGTTGGTGGAAGGCGCCA
ACCGGCAAAAGACGCCGAACGAAATTGCGCTGACCTTGTTGCTGGCAGCGATGACGCTGACGTTTTTGATCGTGGTGGCA
TCGTTGCCGGCGATCGCGGGCTTTGTCGGCGTCACGCTGGATCCGCTGCTGCTGATCGCGTTGCTGGTGTGCCTGATCCC
GACCACCATCGGCGGGCTGTTGCCGGCCATTGGTATCGCTGGCATGAACCGCGCGCTGTCGGCCAATGTGTTGGCCAAAT
CCGGCAAGGCCGTGGAAGTGGCCGGCGACGTGGATGTGCTGCTGCTCGACAAGACCGGCACCATTACCTACGGCGACCGC
CAGGCCACCGCGTTCCATCCGCTGGCCGGCGTCGACCGCGTGCAATTGCGCGATGCGGCCATGCTCGCCTCGCTGGCCGA
CCCGACGCCGGAAGGGAAATCCATCGTCAAGCTGGCGCGTCAGCAAGGTGCCATCGCAGTGGAGGCGGAGGGTGGGGATT
TCATCGCGTTCACCGCGCAGACGCGTATGTCCGGCGTGGATATCGGCGGGCGCAGCATCCGCAAGGGCGCCGGCGATTCG
ATCGTGGCGTATGTGCAGGCGCAGGGCGCGACGGTCTCGCCGGAATTGCAGGGCCGCATCGAAGAAGTCGCACGTGGCGG
TGCCACACCGTTGGTGGTGGCCGAAGGCCGTCATGTGCTCGGTGTGGTCGAGTTGAGCGACGTGGTCAAGCAGGGCATCA
AGGAAAAGTTCGCGCAGTTGCGTGCGATGGGCATCAAGACGGTGATGATCACCGGCGACAACCCGCTCACCGCAGCCGCG
ATCGCTGCCGAAGCCGGCGTGGACGACTACATCGCCCAGGCTCGCCCGGAAGACAAGCTGGCACGCATCCGTGCCGAACA
GACGGGCGGGCGACTGGTGGCGATGGTCGGCGACGGCACCAACGATGCCCCGGCGCTCGCGCAGGCCGACGTGGGCCTGG
CAATGAACTCCGGCACGCAGGCGGCCAAGGAAGCCGGCAACATGGTGGATCTGGATTCGGATCCGGCCAAGCTGCTGGCG
GTGGTGGAAGTGGGCAAGCAGCAGCTGATCACGCGTGGCGCGTTGACCACCTTCTCGCTGGCCAACGACGTTTCCAAGTA
TTTCGCGATCCTGCCGGCGCTGTTTGCTGCCGCCATCCCGTCGATGGCAGCGCTCAACGTGATGCAGCTCTCCAGCCCGC
GCCATGCGGTGCTGGCGGCGCTGATCTTCAATGCGTTGATCATTCCGGCCTTGATTCCGCTGGCGTTGCGCGGGGTGCGT
TTTCGTCCCTCCAGCGCCACCGCGCTGTTGCGCCGGAACATGATGATCTACGGCGTGGGTGGCGTGTTGCTGCCGTTCGC
TGCGATCAAAGCGATCGATCTGGCGCTGGTTGCCGTCCTCGGTGCCTGA

Protein sequence :
MSTIDTTEKRERGDAALFDAAVLVAAMRAAFAKLAPRHLLRSPVMAVVMGGTVLAAVITASGHSHAGFGWAVTAILFVTV
LFGNFAEAIAEARGRGQAASLRRARKDLVARRVETALGGRETRVPAAELRPGDYVMVSEGEFVPADGEIVRGVATINEAA
VTGESAPVLREAGTDRSGVIGGTRVLSDEIVFKVTAEPGHSFLDRMIALVEGANRQKTPNEIALTLLLAAMTLTFLIVVA
SLPAIAGFVGVTLDPLLLIALLVCLIPTTIGGLLPAIGIAGMNRALSANVLAKSGKAVEVAGDVDVLLLDKTGTITYGDR
QATAFHPLAGVDRVQLRDAAMLASLADPTPEGKSIVKLARQQGAIAVEAEGGDFIAFTAQTRMSGVDIGGRSIRKGAGDS
IVAYVQAQGATVSPELQGRIEEVARGGATPLVVAEGRHVLGVVELSDVVKQGIKEKFAQLRAMGIKTVMITGDNPLTAAA
IAAEAGVDDYIAQARPEDKLARIRAEQTGGRLVAMVGDGTNDAPALAQADVGLAMNSGTQAAKEAGNMVDLDSDPAKLLA
VVEVGKQQLITRGALTTFSLANDVSKYFAILPALFAAAIPSMAALNVMQLSSPRHAVLAALIFNALIIPALIPLALRGVR
FRPSSATALLRRNMMIYGVGGVLLPFAAIKAIDLALVAVLGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kdpB BAA82181.1 potassium-transporting ATPase(B chanin) Not tested Type-II SCCmec Protein 1e-124 54
kdpB YP_251949.1 potassium-transporting ATPase subunit B Not tested SCCmec Protein 2e-124 54
SAR0071 YP_039539.1 potassium-transporting ATPase subunit B Not tested Type-II SCCmec Protein 1e-124 54
kdpB(SCCmec) NP_370597.1 potassium-transporting ATPase subunit B Not tested Type-II SCCmec Protein 1e-124 54
kdpB NP_373310.1 potassium-transporting ATPase subunit B Not tested Type-II SCCmec Protein 1e-124 54
kdpB YP_190029.1 potassium-transporting ATPase subunit B Not tested Type-II SCCmec Protein 1e-124 54
kdpB NP_814334.1 potassium-transporting ATPase subunit B Not tested Not named Protein 1e-125 54
ef0088 AAM75291.1 EF0088 Not tested Not named Protein 9e-126 54