Gene Information

Name : hrcV (XAC0405)
Accession : NP_640760.1
Strain : Xanthomonas axonopodis 306
Genome accession: NC_003919
Putative virulence/resistance : Virulence
Product : HrcV protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4789
EC number : -
Position : 475529 - 477466 bp
Length : 1938 bp
Strand : -
Note : -

DNA sequence :
ATGCTAGGAGATCGCGTGCGAGCGACAAGGTATTTCGCTTACAGCGGCGAAGTCGCCATCGCCGCCTTGGTGGTGGCGGT
CATCGGGCTGATGATCCTGCCGCTGCCAACGCCGCTGATCGATACGCTGCTGGGCATCAACATCACCCTGAGCGTGGTGC
TGTTGATGGTCACGATGTATGTGCCCGACTCGATCTCGCTCTCGTCGTTTCCTTCCCTGCTGCTGTTCACCACACTGCTG
CGGTTATCCTTGAATATCGCCTCGACGAAGTCGATTCTGCTGCACGCCGAGGCGGGCCATATTATCGAGAGCTTTGGCGA
GTTGGTGGTCGGCGGCAATCTGGTGGTAGGCCTGGTCGTTTTCTTGATCATCACCACCGTGCAGTTCATCGTGATCGCAA
AGGGCTCCGAACGCGTTGCCGAGGTCGGTGCACGCTTCACGTTGGACGCAATGCCCGGTAAGCAGATGAGTATCGATGCC
GACCTGCGCGGCGGCAACCTGACCGCAGATGAAGCACGCCGCAAACGCGCACGGCTGGCCATGGAAAGCCAACTGCACGG
CGGCATGGACGGCGCCATGAAATTCGTCAAGGGTGATGCGATCGCCGGCCTGGTAATTACCATGGTCAACATCCTGGCCG
GCATCGTGGTCGGCGTGACGTACCACGGCATGACCGCGGGCGAAGCGGCCAACCGCTTTGCGATCCTGTCGGTGGGCGAT
GCCATGGTGTCGCAGATCGCCTCACTGCTGATATCGGTGGCTGCCGGCGTCATGATCACCCGCGTGGCCAACGAGAACGA
GACAAGGCTCAGCTCGCTCGGGCTCGATATCGGCCGTCAGCTCACCAGCAATGCGCGCGCCCTGATGGCAGCGAGCGTGC
TGCTGGCCTGCTTTGCGTTCGTCCCTGGATTCCCGGCCGTGCTGTTCCTGCTGCTGGCAGCGGCCGTCGGCGCCGGCGGC
TATACGATCTGGCGCAAGCAACGCGATATCAGCGGCACCGATCAGCGCAAACTGCCTTCGACGAGCCGTAAAGGCGCCAA
GGGCGAGGCGCCACATATTCGCAAAAACGCCCCTGATTTCGCCTCACCCCTGTCGATGCGTCTGTCGCCGCAGCTGGCCA
ATCTGCTCGACCCCGCGCGGCTTGATCAGGCGATCGAAAGCGAGCGCCGCAAGTTGGTCGAGTTGCTGGGCTTGCCGTTT
CCCGGAATCGCGATATGGCAGAGCGAGTCCCTGCAGGACATGCAATACGAGGTGTTGATTCACGATGTCCCCGAGACACG
CGCCGAATTGGGGGACACCGACGACATGCAAGCGGCGCTGGCCCGCCAGGCCATCGCACCCCTGCACGCGCGCGCGCACC
TGTTCGTCGGCATCCAGGAAACCCAGTGGATGCTGGAGCAGGTGGCTGTGGACTATCCCGGGCTGGTTGCGGAGGTCAAC
AAGGCGATGCCCGCACAACGCATTGCCGATGTGTTGCGGCGTCTGCTGGAAGAAAGGATTCCGGTGCGCAATATCAAGAG
CATTCTGGAGAGTCTGGTGGTATGGGGTCCGAAGGAAAAGGACCTTCTGATGTTGACCGAATATGTGCGCTGCGATCTCA
GCCGTTATCTTGCGCATACCGCAACCGCAGGCACCGGGCAGCTGCCTGCGGTGATGCTCGACCATGCTGTGGAACAAATG
ATCAGGCAATCCATTCGCGCGACCGCGGCCGGCAATTTCCTGGCCCTTCCGCCCGAGCAGGCGAACCAGCTTGTCGAACA
GGTGGAACGCATCGTGGGCGACCAGGCGCAGCATCCGCTGGCGGTGGTCGCATCGATGGACGTACGCCGCTATGTGCGCC
GCATGATCGAAGCACGGCTGACGTGGCTGCAGGTTTATTCGTTCCAGGAACTGGGTTCGGAGGTGCAGTTACAGCCGATC
GGCAGGGTGGTGGTGTGA

Protein sequence :
MLGDRVRATRYFAYSGEVAIAALVVAVIGLMILPLPTPLIDTLLGINITLSVVLLMVTMYVPDSISLSSFPSLLLFTTLL
RLSLNIASTKSILLHAEAGHIIESFGELVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDA
DLRGGNLTADEARRKRARLAMESQLHGGMDGAMKFVKGDAIAGLVITMVNILAGIVVGVTYHGMTAGEAANRFAILSVGD
AMVSQIASLLISVAAGVMITRVANENETRLSSLGLDIGRQLTSNARALMAASVLLACFAFVPGFPAVLFLLLAAAVGAGG
YTIWRKQRDISGTDQRKLPSTSRKGAKGEAPHIRKNAPDFASPLSMRLSPQLANLLDPARLDQAIESERRKLVELLGLPF
PGIAIWQSESLQDMQYEVLIHDVPETRAELGDTDDMQAALARQAIAPLHARAHLFVGIQETQWMLEQVAVDYPGLVAEVN
KAMPAQRIADVLRRLLEERIPVRNIKSILESLVVWGPKEKDLLMLTEYVRCDLSRYLAHTATAGTGQLPAVMLDHAVEQM
IRQSIRATAAGNFLALPPEQANQLVEQVERIVGDQAQHPLAVVASMDVRRYVRRMIEARLTWLQVYSFQELGSEVQLQPI
GRVVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcV NP_640760.1 HrcV protein Virulence Hrp PAI Protein 0.0 100
hrcV AAP34346.1 HrcV Virulence Hrp PAI Protein 0.0 99
hrcV BAB07859.1 HrcV Virulence Hrp PAI Protein 0.0 98
hrcV YP_198723.1 protein HrcV Virulence Hrp PAI Protein 0.0 98
hrcV YP_362156.1 HrcV protein Virulence Hrp PAI Protein 0.0 98
XC_3013 YP_244081.1 HrcV protein Virulence Hrp PAI Protein 0.0 95
hrcV NP_636603.1 protein HrcV Virulence Hrp PAI Protein 0.0 95
lssD AAO18050.1 LssD Virulence TTSS locus Protein 3e-95 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcV NP_640760.1 HrcV protein VFG0064 Protein 6e-97 44
hrcV NP_640760.1 HrcV protein VFG0384 Protein 8e-94 42
hrcV NP_640760.1 HrcV protein VFG0198 Protein 8e-91 42