|
Name : topB (XAC2212) Accession : NP_642529.1 Strain : Xanthomonas axonopodis 306 Genome accession: NC_003919 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 2596003 - 2598039 bp Length : 2037 bp Strand : + Note : decatenates replicating daughter chromosomes DNA sequence : ATGCGCGTGGTTCTGTGCGAGAAGCCGTCCCAGGGCAAGGACATCGCCCGGGTCCTGGGCGCACACCGGCGAGAAGCCGG CTGCCTGGGTGGGCCGGGCATCACAGTCACCTGGGGCAGCGGCCACCTGATCGAAGCCGCGCCCCCGGAGGCCTACGGCG AGCACTTCCAGCGCTGGACGCTGCCGATCGTTCCCCCGCGGTGGCAGTGGGTCGTCAAGGCACGCAGCGCCGCGCAGTTC AAGGTCGTCAAACGGCTGCTCGGCGAGGCCTCCGAGCTCATCATCGCCACCGACGCCGATCGCGAAGGCGAGATGATCGC CCGCGAGATGATCGACTACTGCGGCTACCGCGGCCCGGTCCAGCGTCTGTGGCTGTCGGCGCTCAACGATGCGTCGATCC GCAAGGCGTTCGGCGCACTGCGGGCCTCCAGCGAGACGCTCTCCCTCTACCACTGCGCGCTCGCGCGTTCCCGCGCCGAC TGGCTGGTCGGCATCAATCTGACCCGCCTGTTCACGCTGCTCGGGCGCCATGCCGGCCACGACGGCGTGCTCTCCGTGGG GCGCGTGCAGACGCCCACCCTCAAACTGGTCGTGGACCGCGACCGGGAGATCGCGGCATTCGTGCCGGTTCCGTTCTGGT CCATCGATGTGTCTCTTTCCGCGGCAAATGTGCCGTTCTCCGCCCATTGGCTTGCGCCCCGCACCGCAACGGACGATGCG GGACGCTGTCTGCGGCAGTCCGTCGCACGCCATGCGGCCGACGCCATCCGCGCCGCCGGCACCGCGCAGGTCGTGCACAC CGAGACCGAGCGCGTGCGCGAAGGCCCGCCCCTTCCCTTCGATCTGAGCACGTTGCAGGAAGTCTGTTCACGGCGCCTCG GCCTGGAGGTGCAGGAAACCCTCGACATCGCGCAAGCCCTCTACGAGACGCACAAGGCGACGACGTATCCCCGCACCGAT GCGGGTTACCTGCCCGAGAACATGCTCGCGGAGGTTCCCACGGTCATCCAAAGTCTGGTGAAGACCGACCCCGCGCTGCA GCCGCTGATCGACCGCCTCGACTTCCGCCAGCGTTCCCGGGCCTGGAACGATGCGAAGATCACCGCGCACCACGCCATCA TTCCCACGCTGGAACCTGCCGATATTTCTGCGATGTCCGCGAAGGAGCTTGCGGTGTACCGGCTCATCCGCGCCCACTAT CTCGCGCAGTTCCTTCCCCATCACGAGTTCGACCGAACCGTCGTGCGCTTCCGATGCGGCGGCGAGACGCTGCAGGCGGT CGGCAAGCGCATCGCCGTTCCGGGCTGGCAGCACGCATTCTCGGCACCGTCGCTGCCGCACGTCGCGGCCGATGGGGCTG ACACCGAAGGCAGCGACGAAGCGCCCCGCGAGCAGATGCTGCCGGTACTGCAGGAAGGCATATCGTGTCAGGTGAGCGCG CTGGATCTGAAGTCGCTGAGCACCAAGCCGCCACGGCCCTATACCCAGGGCGAACTCGTCAAGGCGATGAAGACGGTCGC CCGGCTCGTGACCGATCCGCGCCTCAAGCAAAAGCTCAAGGACACCACCGGCATCGGCACGGAGGCAACGCGCGCGAACA TCATCAGCGGGCTGCTTTCCCGGGGATTCCTGATCCGCAAGGGCCGCGCCGTACGGGCATCGGACACGGCGATGATGCTT ATCGACGCCGTTCCCGCGGCCATCGCGGACCCGGGCACCACGGCGATCTGGGAGCAGGCCCTGGACATGATCGAAGCGCG CCAGATGGGACTGGAGTCCTTCGTCGAGAAGCAGGCCGCCTGGGTCACGCAGCTGGTGCGGCAGCATCTCGGCACCACCC TCGCGATACGCAGTCCCGAGGGCCCGCCTTGCCCGCTGTGCGGCGCGGCGACGCGCCAGCGCACTGGCAGGAGCGGGCCG TTCTGGTCCTGCAGCCGCTACCCGGACTGCAAGGGAACGGCCCCGGTCGCACCCGCGCAAGCGGGCCCGGACGGGCAGAA GCGATCCAGGAGCCGCGGCGCTCGCGCGCAACGCTAG Protein sequence : MRVVLCEKPSQGKDIARVLGAHRREAGCLGGPGITVTWGSGHLIEAAPPEAYGEHFQRWTLPIVPPRWQWVVKARSAAQF KVVKRLLGEASELIIATDADREGEMIAREMIDYCGYRGPVQRLWLSALNDASIRKAFGALRASSETLSLYHCALARSRAD WLVGINLTRLFTLLGRHAGHDGVLSVGRVQTPTLKLVVDRDREIAAFVPVPFWSIDVSLSAANVPFSAHWLAPRTATDDA GRCLRQSVARHAADAIRAAGTAQVVHTETERVREGPPLPFDLSTLQEVCSRRLGLEVQETLDIAQALYETHKATTYPRTD AGYLPENMLAEVPTVIQSLVKTDPALQPLIDRLDFRQRSRAWNDAKITAHHAIIPTLEPADISAMSAKELAVYRLIRAHY LAQFLPHHEFDRTVVRFRCGGETLQAVGKRIAVPGWQHAFSAPSLPHVAADGADTEGSDEAPREQMLPVLQEGISCQVSA LDLKSLSTKPPRPYTQGELVKAMKTVARLVTDPRLKQKLKDTTGIGTEATRANIISGLLSRGFLIRKGRAVRASDTAMML IDAVPAAIADPGTTAIWEQALDMIEARQMGLESFVEKQAAWVTQLVRQHLGTTLAIRSPEGPPCPLCGAATRQRTGRSGP FWSCSRYPDCKGTAPVAPAQAGPDGQKRSRSRGARAQR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 70 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 69 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 62 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 9e-169 | 50 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 9e-169 | 50 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 6e-169 | 50 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 3e-158 | 48 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 3e-153 | 47 |
