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Name : vipA (XAC2105) Accession : NP_642422.1 Strain : Xanthomonas axonopodis 306 Genome accession: NC_003919 Putative virulence/resistance : Virulence Product : polysaccharide biosynthetic protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 2459067 - 2460359 bp Length : 1293 bp Strand : + Note : - DNA sequence : ATGTCCGGCACCACACTTCTCGGCCCCGCACAGGGGCGCATCGCCGTCATCGGCTTAGGTTACGTCGGCCTGCCATTGGC GGTTGCATTCGGGGAGCAACGCGACACCGTGGGCTTCGACATCGATGCGCAGCGCGTTGCGCAACTGCGCGATGGCCACG ATGTCACGCTGGAACTGGACGATGCCGAATTGGGTGCCGCAACGCACTTGCGCTACAGCGCAAACGCTGCGGATCTGGCT GGGTGTCGCATTTTCATCGTGACCGTGCCGACGCCGATCGATAGCTTCGAGCAACCGGATCTGGAGCCGTTGCGTAGCGC CACGGCCTTGATCGCCGCCGCCCTCAAGCCCGGCGATCTGGTGATCTACGAATCCACGGTCTATCCAGGAACCACTGAAG AAGTTTGCGTGCCCTTGCTCGAAGCAACCTCCGGGCTGCGTTTCAACCACGACTTCTTTTGCGGCTACAGCCCCGAGCGC GTCAATCCCGGCGATCGCCAGCGGCGTCTGCGTGATATCCGCAAGATCACCTCGGGCTCGACGGCAGACGCCGCCGATGC CGTCGATGCGCTATACACCAGCATCATCACTGCCGGCACCTGGCGCGCTCCGTCGATGCGCGTGGCCGAAGCGGCAAAGG TGGTCGAAAACATCCAGCGCGACGTCAATATCGCGCTGGTCAACGAGTTGGCGTTGATTTTCGACAAGTTGGGAATCGAC ACCCTCGATGTGCTCGAGGCCGCAGGAACCAAGTGGAATTTCCTGCCATTTCGCCCTGGCCTGGTCGGCGGGCATTGCAT CGGGGTGGATCCGTACTACCTGATGCACAAATCCGAAAGCGTGGGCTATCACCCGGACCTGATCCACACCGCGCGGCAGG TCAATAATCGTGTCGGCCGACATGTAGCCGAGCGCGTGTGCGGCATGCTGGCCATGCGTGGCGTCGCGCTTGCGCAGGCG AGGGTGCTGGTACTGGGCGCGACATTCAAGGAAAACTGCCCGGATCTGCGCAACAGCCGCGCCCTGGAATTGGTGCAGTT GCTGCAGGCCGCGGGCGTGCAGGTGGACACCTGCGACCCGTGGGCAGACCCGGCTGAAGCGCTGCAGCACGGCGGTGTGC GCTTAAGCGAGATGCCGGAAGATGGCGCCTACGATGCCGTCGTGCTGGCTGTGGCGCACGCGCAGTATCGCGATTACGAC GTGGAGCGGATCGCCGCGCTCGGCAAACCGGGCGCGGTGGTGTACGACGTCAAATCGGTGTGGCCGCGTGCGGCGGTCAG CGATCGCCTGTAG Protein sequence : MSGTTLLGPAQGRIAVIGLGYVGLPLAVAFGEQRDTVGFDIDAQRVAQLRDGHDVTLELDDAELGAATHLRYSANAADLA GCRIFIVTVPTPIDSFEQPDLEPLRSATALIAAALKPGDLVIYESTVYPGTTEEVCVPLLEATSGLRFNHDFFCGYSPER VNPGDRQRRLRDIRKITSGSTADAADAVDALYTSIITAGTWRAPSMRVAEAAKVVENIQRDVNIALVNELALIFDKLGID TLDVLEAAGTKWNFLPFRPGLVGGHCIGVDPYYLMHKSESVGYHPDLIHTARQVNNRVGRHVAERVCGMLAMRGVALAQA RVLVLGATFKENCPDLRNSRALELVQLLQAAGVQVDTCDPWADPAEALQHGGVRLSEMPEDGAYDAVVLAVAHAQYRDYD VERIAALGKPGAVVYDVKSVWPRAAVSDRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 4e-112 | 52 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 4e-112 | 52 |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-94 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| vipA | NP_642422.1 | polysaccharide biosynthetic protein | VFG0431 | Protein | 2e-112 | 52 |
