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Name : lysS (XAC1876) Accession : NP_642202.1 Strain : Xanthomonas axonopodis 306 Genome accession: NC_003919 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2176503 - 2178020 bp Length : 1518 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACCGAGCAGACCCCCGCGCCGCAGCCCCCCGCCGACGAGAACAGCCTCATCGCCGAGCGCCGCGCGAAACTGGGCGC GTTGCGCGGGCAGGGCATCGCCTACCCGAACGACTTCGTGCGCGAACACTTCGCCGGCGATCTGCAGGCAGAATTCGCCG ACGCCGACACCTGGACCCCGGAAGCGCTGGAAGCCAGCGGGCGCACGGTCAGGATGGCCGGCCGCCTGATGGCCAAGCGG GTGATGGGCAAGGCCAGCTTTGCGCAGATCCAGGACGAATCCGGGCGTGTGCAGCTGTTCCTGCAGGGCAATGTGCTCGG CGATGCCTATACCGCGTTCAAGGGCTGGGATGTGGGCGACATCGTGGCGGTGGAGGGAGGGCTCACCCGCACCAAGACCG GCGAGCTGTCGGTCAAGGCCAGCGCGCTGCGCCTGCTGACCAAGTCGCTGCGCCCGTTGCCGGACAAGTGGCACGGCCTG TCGGATGTTGAGCAGCGTTACCGCCAGCGTTATGTCGACCTGATCGTGACACCGGAAGCGCGCGAGGTCTTCATCAAGCG ATCCAAGATCATCCGCGCCATGCGCGCCTGGCTGGACGCGCGCCGCTTCCTGGAAGTGGAAACGCCGATGATGCATTACA TTCCCGGCGGCGCCACGGCCAAGCCATTCACTACCCACCACAATGCGCTGGACCTGGACTTGTACCTCCGCGTCGCCCCA GAGCTGTATCTCAAGCGTCTGGTGGTCGGTGGCCTGGAGCGCGTCTACGAGATCAACCGCAATTTCCGCAACGAAGGCGT GTCGACCCGGCACAACCCCGAGTTCACCATGCTCGAGCTCTACGAGGCTTATGCCACGTACCACCAGATCATGGACCTGA CCGAGCAGGTGATCCGCGACACCGCGCAGTCGGTGTTGGGTACCACGCAGGTGAGCTGGGATGGCGCGGACATCGATTTG GCGCCGGCTTTCCGGCGCTGGCGCATGGATGAGGCCGTTCGTCACCATAATCCGGAGATCAGCGCTGCCGACTGCACCGA CCGCGAGGCGCTGCTGCGCCATTGCGAGCGGCTCAAGATCCGCGTGAAGCCGTCTTACGGCTGGGGCAAGCTGCTGCTGG AGATTTTCGAGGCGACCGTGGAGCACACCCTGGTGCAGCCGACCTTCATCACCGACCACCCGGTCGAAGTGTCGCCGCTG GCGCGTTCCAGCGACACCGAGCCGGGTTACACCGACCGCTTCGAGCTGTTCATCAACGGTAAGGAGCTGGCCAACGGCTT TTCCGAGCTCAACGACCCCGAAGACCAGGCCGCACGTTTCCAGGCGCAGGTGCAGGCCAAGGACGGCGGCGACGACGAAG CGATGCATTTCGATGCCGATTACATCCGTGCCTTGGAGTACGGCATGGCGCCGACCGGCGGCCTGGGCATCGGTATCGAT CGTCTGGTGATGCTGCTGACCGGCAGCACCTCGATCCGCGATGTCCTGCTATTCCCGTACATGCGTCCGGAAGCCTGA Protein sequence : MTEQTPAPQPPADENSLIAERRAKLGALRGQGIAYPNDFVREHFAGDLQAEFADADTWTPEALEASGRTVRMAGRLMAKR VMGKASFAQIQDESGRVQLFLQGNVLGDAYTAFKGWDVGDIVAVEGGLTRTKTGELSVKASALRLLTKSLRPLPDKWHGL SDVEQRYRQRYVDLIVTPEAREVFIKRSKIIRAMRAWLDARRFLEVETPMMHYIPGGATAKPFTTHHNALDLDLYLRVAP ELYLKRLVVGGLERVYEINRNFRNEGVSTRHNPEFTMLELYEAYATYHQIMDLTEQVIRDTAQSVLGTTQVSWDGADIDL APAFRRWRMDEAVRHHNPEISAADCTDREALLRHCERLKIRVKPSYGWGKLLLEIFEATVEHTLVQPTFITDHPVEVSPL ARSSDTEPGYTDRFELFINGKELANGFSELNDPEDQAARFQAQVQAKDGGDDEAMHFDADYIRALEYGMAPTGGLGIGID RLVMLLTGSTSIRDVLLFPYMRPEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-129 | 53 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-80 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | NP_642202.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 6e-130 | 53 |
