Gene Information

Name : XAC1052 (XAC1052)
Accession : NP_641396.1
Strain : Xanthomonas axonopodis 306
Genome accession: NC_003919
Putative virulence/resistance : Unknown
Product : ISxac3 transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1210250 - 1211065 bp
Length : 816 bp
Strand : -
Note : -

DNA sequence : 
GTGTGCGCGATGTGCCGGGTTTTGCGGGTGAACCGGGCTGGATACTACGCGTGGCTAAAGTCGCCCGACAGTGAACGCGC
CAAGGAAGACGAACGCCTGCTGGGGCTGATCAAGCACCACTGGTTGGCCAGCGGCAGTGTCTATGGGCATCGCAAGATTG
CCAAGGATCTACGCGATCTGGGTGAGCGTTGCAGTCGCCATCGGGTGCATCGATTGATGCGCACCGAGGGACTGCGTGCC
CAGGTGGGCTATGGCCGCAAGCCGCGCTTCCATGGCGGAACGCCGTGCAAGGCGGCAGCCAACCTGCTGGATCGACAGTT
CGACGTGACCGAGCCGGACACGGCCTGGGCGAGCGACTTCACCTTCATCCGTACGCATGAAGGCTGGATGTACCTGGCTG
TGGTGATCGATCTGTTTTCCAGGCAGGTCGTCGGCTGGGCGATGCGCGATCGAGCCGATACCGAGTTGGTCGTGCAGGCC
TTGCTGTCGGCGGTGTGGCGGCGCAAACCCAGCGCTGGTTGCCTGGTTCATTCGGACCAGGGGTCTGTCTACACCAGCGA
TGACTGGCGCAGTTTCCTGGCGTCCCATGGCTTGGTGTGCAGCATGAGTCGGCGTGGCAACTGCCACGAGCGCGAAGCCT
GCCCTTGGGGCACAACGCACCGGTGGAGAGCTTCTTTGGTCTGCTCAAACGCGAGCGGATCAGGCGGCGGATCTACCCCA
CCAAGGACGCCGCACGCGCCGAGGTGTTCGACTACATCGAGATGTTCTACAACCCACAACGCCGTCATGGTTCAACTGGC
GACCTGTCCCCTGTAG

Protein sequence : 
MCAMCRVLRVNRAGYYAWLKSPDSERAKEDERLLGLIKHHWLASGSVYGHRKIAKDLRDLGERCSRHRVHRLMRTEGLRA
QVGYGRKPRFHGGTPCKAAANLLDRQFDVTEPDTAWASDFTFIRTHEGWMYLAVVIDLFSRQVVGWAMRDRADTELVVQA
LLSAVWRRKPSAGCLVHSDQGSVYTSDDWRSFLASHGLVCSMSRRGNCHEREACPWGTTHRWRASLVCSNASGSGGGSTP
PRTPHAPRCSTTSRCSTTHNAVMVQLATCPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-26 43
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 4e-26 43
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 4e-26 43
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-26 43
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 3e-26 43
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-26 43
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-26 43
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-26 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XAC1052 NP_641396.1 ISxac3 transposase VFG1122 Protein 2e-26 43