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Name : SPO0098 (SPO0098) Accession : YP_165372.1 Strain : Ruegeria pomeroyi DSS-3 Genome accession: NC_003911 Putative virulence/resistance : Unknown Product : peptide/opine/nickel uptake ABC transporter ATP-binding protein Function : - COG functional category : R : General function prediction only COG ID : COG4172 EC number : - Position : 99759 - 101357 bp Length : 1599 bp Strand : - Note : identified by match to protein family HMM PF00005 DNA sequence : ATGAGCCTGTTGCAGATCACCGACCTGTCGCTGTCGATCCATGCCTATGACATCCTCAAGCGCGTCTCACTGACCATCGA CGCGGGCGAGATCGTGGCCGTCACCGGCGAGAGCGGCTCGGGCAAGTCGATGACGGCGCTGGCCGTGATGCAGCTGTTGC CCGGCGGAGCGCGAGCCAGCGGCTCGATCCGGCTGGACGGACAAGAGATTCTGACCCTGCCCGAGGCAGAAATGTGCGCC CTGCGCGGCGCGGCGGTCGGGATGGTGTTTCAGGAACCGATGACCGCACTGAACCCGGTCAAGACCATCGGCGATCAGGT GATGGAAACGATCCTGATCCACAAAGCGATGACGCCCATCAGGGCGGAAGAGCGCGCGCGCGAAGTGCTGACCCGTGTCG GCCTGCCGCCTGACCGGTTCCCGCTTTCGCGCTATCCGCATGAACTCAGCGGCGGCCAGCGCCAGCGCGTGGTCATCGCC ATGGCCATCGCACTGCGCCCGAAACTGCTGATCGCGGACGAGCCGACAACCGCGCTCGACGTCACCACGCAGGCGCAGAT CCTCGACCTGCTCAAGGGGCTGGTGCAGGAATACGGCATGGGCATGCTGATGATCACCCATGACCTGGCCGTTGTTGCCG ACATGGCCGACCATATCACCGTCATGCGCCATGGCGAGGTGGTCGAGGCCGCCCCGACCCAGCGCCTGCTGACCGGTATG AGTCATCCCTATACGAAGATGCTGTTCGCCGCCTCGGATCACCGCGTGACCCTGCCCGCGCCACCGCCACCGGCACCGCT GCTGGAGGTGTCGGAGGTGGTGCGCGACTATGCCCTGCCGCGCACCCGGCTGTTTGCGCACCCGGGGCATCACCGCGCCG TGGATCATGTCAGCTTTGCCCTGAACCGGGGCGAGCGGCTGGGGCTGGTCGGCGAATCCGGCTGTGGCAAATCCACCCTG ACACGCGCCATCCTGGGGCTGGAGCCGGTACAGGGCGGCGAAATCCGTCTGGCGGGGCAACCGGTCTATGACGGCAAACG CGCCAATCCCGAAATCCGCCGCCGCATGCAGGTGGTGTTTCAGGATCCTTACGGCAGCTTCAACCCGCGCCACCGTGTCG ACCGGCTGGTGACCGAACCGTTTCATCTGCTCGATGCGCCGCCAACCGGGTCGGACCGCAGCGACCGCATTGCCGAGATG CTGACCGCCGTCGGCCTGTCGCCCGACGATGCGGGAAAGTATATCCACGAGTTTTCCGGCGGTCAGCGCCAGCGCATCGC CATTGCCCGTGCGCTGATCATCCGGCCTCAGCTGATCCTGTTCGACGAGGCGGTCTCGGCGCTTGATGTCTCGGTCCGGG CGCAGATCCTTGACCTGCTGGCGCAGCTCTGCTCCGAATATGACCTGACCTATCTGTTCATCAGCCATGATCTGAGCGTG GTGCGCACGATCACCGACCGGGTGCTGGTGATGCAATCGGGCCGCATTGTCGAACAGGGCGAGACCGCACAGGTCTTCTC GGACCCCGCGCATCCCTATACCCGGGCCCTGATCGCCGCCGCGCCGCGTCTGCCCGAAACCGGGGCGCGGCGGGCATGA Protein sequence : MSLLQITDLSLSIHAYDILKRVSLTIDAGEIVAVTGESGSGKSMTALAVMQLLPGGARASGSIRLDGQEILTLPEAEMCA LRGAAVGMVFQEPMTALNPVKTIGDQVMETILIHKAMTPIRAEERAREVLTRVGLPPDRFPLSRYPHELSGGQRQRVVIA MAIALRPKLLIADEPTTALDVTTQAQILDLLKGLVQEYGMGMLMITHDLAVVADMADHITVMRHGEVVEAAPTQRLLTGM SHPYTKMLFAASDHRVTLPAPPPPAPLLEVSEVVRDYALPRTRLFAHPGHHRAVDHVSFALNRGERLGLVGESGCGKSTL TRAILGLEPVQGGEIRLAGQPVYDGKRANPEIRRRMQVVFQDPYGSFNPRHRVDRLVTEPFHLLDAPPTGSDRSDRIAEM LTAVGLSPDDAGKYIHEFSGGQRQRIAIARALIIRPQLILFDEAVSALDVSVRAQILDLLAQLCSEYDLTYLFISHDLSV VRTITDRVLVMQSGRIVEQGETAQVFSDPAHPYTRALIAAAPRLPETGARRA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 9e-84 | 46 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 9e-84 | 46 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 9e-84 | 46 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 9e-84 | 46 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 3e-90 | 44 |
