Gene Information

Name : kpsT (SPO0949)
Accession : YP_166202.1
Strain : Ruegeria pomeroyi DSS-3
Genome accession: NC_003911
Putative virulence/resistance : Virulence
Product : capsular polysaccharide export ATP-binding protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : 3.6.3.38
Position : 1000873 - 1001586 bp
Length : 714 bp
Strand : -
Note : identified by similarity to SP:P10640; match to protein family HMM PF00005

DNA sequence : 
GTGTGGCCTGACCGCCATGCAAAACATCTCACATTGGGCCGTAGCAGACAGCAGATGCTAGAGTTCGAAAACGTCAGCAA
GTCCTTCTGGACAGGAACACAACGCAAAGTGATCCTGGACCGTGTCTCGTTCCGGGTGGAGCTGGGCAAGTCGATGGGCA
TCCTGGCGCCGAACGGGACCGGAAAATCTACCCTGATCAACATGATGGCAGGGCTGGAAAAGCCGGACGAAGGCGTGATC
CGCCGTGGCTGCAATATCTCGTTTCCGCTGGGGTTCATGGGCGGTGTCGTGGGCCGTCTGTCGGCGATGGAGAATTCGCG
CTATATCGCCCGGCTCTACGGGATGGACCCCGATTACATCGAAGCCTATTGCCGCTGGCTGTGTGGTCTGGGCGAGTATT
TCGACCAGCCGCTGGGCACGTATTCCTCGGGGATGCGGGCGCGGTTCTCCTTTGCCTTGATGCTGGCGCTGGATTTCGAC
ATGTATCTGATCGACGAGGGCATGCCCGCCTCGACCGATGTCGAGTTCAACAAGAAGGCGGGCGCCATCCTCGAAGAGCG
GTTGCGCACCACCACCATTGTCATCGTCTCGCACCAGCCCGCCACGCTGGAACAATTCGCCCGGCAGGCGGCCGTTCTGA
TGGACGGCCAACTGCACGTATTCGACACCTTGGAAGAAGCGAAACAGCTCTATGACTACCAAACCCAAGGCTAA

Protein sequence : 
MWPDRHAKHLTLGRSRQQMLEFENVSKSFWTGTQRKVILDRVSFRVELGKSMGILAPNGTGKSTLINMMAGLEKPDEGVI
RRGCNISFPLGFMGGVVGRLSAMENSRYIARLYGMDPDYIEAYCRWLCGLGEYFDQPLGTYSSGMRARFSFALMLALDFD
MYLIDEGMPASTDVEFNKKAGAILEERLRTTTIVIVSHQPATLEQFARQAAVLMDGQLHVFDTLEEAKQLYDYQTQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 3e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kpsT YP_166202.1 capsular polysaccharide export ATP-binding protein VFG0258 Protein 1e-36 41
kpsT YP_166202.1 capsular polysaccharide export ATP-binding protein VFG0696 Protein 3e-39 41