Gene Information

Name : SPO0556 (SPO0556)
Accession : YP_165817.1
Strain : Ruegeria pomeroyi DSS-3
Genome accession: NC_003911
Putative virulence/resistance : Virulence
Product : UDP-glucose/GDP-mannose dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 552230 - 553540 bp
Length : 1311 bp
Strand : -
Note : -

DNA sequence : 
ATGAAACACGCAAGATCGGGAACGCAAGCCATGTCGCGCCAAACGGATCAGGACCGGATCGCCGTGCTTGGGCTGGGCTA
TGTCGGCCTGCCGCTGGCGCTGGGTCTGGCGCGGGCAGGCTTTCAGACGCTGGGGTTCGACACCGATGCCGCGCATATCA
CGGCGCTGGGGCGCGGCCATGATCGCAATGGCGAGGTCTCGGAACGCTCGCTGGCCGAGACGCGGGCGCGGTTTTCCTGC
GATCCTGCCGATCTGGCGGGCTGCACCGTCTATATCATCGGCGTGCCGACCCCGATCACCGATGCCAAGACTCCCGATCT
GGAACCGCTCAAGGGCGCCTGCCGGATGATCGCGCCGCATCTGGTGCCCGGCGACATGGTGATCGTCGAAAGCACGGTCT
ACCCTGGCGTGACCGAAGAGATCTGCGGCCCGGTTCTGGCCGAGGGCAGCGGGCTGGAGCTTTACTCGCAGATCAAGCTG
GCCTACTCGCCCGAGCGGGTGAACCCCGGCGATGCCGAGCATTCGATGGAGAATGTGGTCAAGATCGTCTCGGCCCAGGA
CGCCGAAACGCTGGACCGGGTCGCCGCCATCTATGCCCCGGTGGTCAAGGCGGGTGTGCATAGGGCCAGTTCAATCCGCA
CCGCCGAGGCCGCCAAGGTGATCGAGAATACCCAGCGCGACCTCAACATCGCCCTGGTCAACGAATTCTCGCTGATCTTC
TCGCGCCTGGGGCTCGACACGCTCGAAGTGCTGGAGGCCGCCGGAACCAAGTGGAACTTCCTGCCCTTCAAGCCCGGGCT
GGTGGGCGGGCACTGCATCGGGGTCGACCCCTATTACCTGACCTACCGGGCCGAGCAGAGCGGCTATCACCCCGAGGTGA
TCCTGGCGGGCCGGCGCATCAACGACAACATGGGCCGCCACGTGGCGCGCCAGCTGATCAAGGCTCTGATCGCCCGCCGC
ATCGACCCGGGCCGGGCGCGGGTGCTGGTGATGGGCTTCACCTTCAAGGAGAACTGCGCCGATATCCGCAATACGCGGGT
GGCCGACATCCTGTCGGAACTGGCCGAATACTCGGTCGCGACCGAGGTCTGCGACCCCTGGGTTGACCCCGAGGCAATGG
AACAGGAATATGGCGTCACACCGGTTTCGGAACCCACGACCGGCGCTTATGATGCGATTGTTGTTGCGGTGGCGCATCGG
CAGTTTGTCGAGTTGGGGGCTGCGGCCATTCGGGCCTTTGGCCTGCCGGGCGCTGTCCTCTATGATATCAAGGGCATTTT
TTCCAAATCCGACACGGATCTAAGGCTATAG

Protein sequence : 
MKHARSGTQAMSRQTDQDRIAVLGLGYVGLPLALGLARAGFQTLGFDTDAAHITALGRGHDRNGEVSERSLAETRARFSC
DPADLAGCTVYIIGVPTPITDAKTPDLEPLKGACRMIAPHLVPGDMVIVESTVYPGVTEEICGPVLAEGSGLELYSQIKL
AYSPERVNPGDAEHSMENVVKIVSAQDAETLDRVAAIYAPVVKAGVHRASSIRTAEAAKVIENTQRDLNIALVNEFSLIF
SRLGLDTLEVLEAAGTKWNFLPFKPGLVGGHCIGVDPYYLTYRAEQSGYHPEVILAGRRINDNMGRHVARQLIKALIARR
IDPGRARVLVMGFTFKENCADIRNTRVADILSELAEYSVATEVCDPWVDPEAMEQEYGVTPVSEPTTGAYDAIVVAVAHR
QFVELGAAAIRAFGLPGAVLYDIKGIFSKSDTDLRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 6e-102 53
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 6e-102 53
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 4e-85 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SPO0556 YP_165817.1 UDP-glucose/GDP-mannose dehydrogenase VFG0431 Protein 2e-102 53