|
Name : yejF (SPO3534) Accession : YP_168729.1 Strain : Ruegeria pomeroyi DSS-3 Genome accession: NC_003911 Putative virulence/resistance : Unknown Product : oligopeptide/dipeptide ABC transporter ATP-binding protein Function : - COG functional category : R : General function prediction only COG ID : COG4172 EC number : - Position : 3743775 - 3745355 bp Length : 1581 bp Strand : - Note : identified by similarity to SP:P33916; match to protein family HMM PF00005 DNA sequence : ATGAGTGCGCTTCTCGAGGTCAAAGGGCTGAATGTCTCGTTCCGTCAGGATGGGCGGATCAGCCAGGCGGTGCGCGGCGT GTCCTTCACGGTGAACCGGGGCGAAACCGTTGCGCTGGTCGGTGAAAGCGGCTCGGGCAAGTCGGTCTCGGCGCTGTCCA CCGTCTCGCTGTTGGGGGACAGCGCGATTGTCGAAGGCTCGGTCACCTATGACGGGCAAGAGATGATCGGCGCCAGCGAA CAGCGGCTGATGGACGTGCGCGGCAACGATATCAGTTTCATCTTCCAAGAGCCGATGACCTCGCTCAACCCGCTGCACAC GATCCGCAAGCAGATGGCGGAATCGCTGGCCCTGCATCAGGGACTGGTGGGTGCGGCGGCGCTGGAGCGAATTCTGGAAC TGCTGGTCAAGGTCGGCATCCGTGATCCCGAAACCCGGCTCGACGCCTATCCCCATCAGCTGAGCGGCGGGCAGCGGCAA CGGGTGATGATCGCCATGGCACTGGCCAACAAACCCGACATCCTGATCGCGGACGAGCCGACCACGGCGCTGGATGTGAC CATCCAGGCGCAGATCCTCGAGTTGCTGGCCGATCTTCAGCGCGAAGAGAACATGGGGATGCTGTTCATCACTCATGATC TGGGCATCGTGCGGCGGATCGCCGACCGGGTCTGTGTGATGAAGGCGGGCGAGATCGTCGAGAGCGGCAGTACCGAAGAG ATCTTCGCGAACCCTCGGCACCCCTACACGCGCAAGCTGCTGGCGGCCGAACCCAAGGGTCGCCCTGACCCTGTGCCGGC CGGAGCCGAAGAGGTGGCGCGTACCGATCACCTGCGGGTCTGGTTCCCGATCCAGCGCGGCTTTCTGCGGCGCACGGTGG GGCATGTGAAGGCGGTGAACGACGCCTCGATTTCGGTGAGGGCGGGCGAGACGCTGGGCATCGTGGGCGAAAGCGGGTCG GGCAAGACCACGCTGGCGCTGGCGATCATGCGGCTGATCGGGTCCGAGGGCGGTATCACCTTTCGCGGCGAGGATGTGCG CAGCTGGTCCACGCGGGAGCTGCGGCGGTTGCGCAAGGACATGCAGATCGTGTTTCAGGATCCGTTCGGCAGCCTGAGTC CACGGATGACCTGCGCCCAGATCATCTCCGAGGGGTTGGCGATCCACAAGGTCGACCCCCATCGCGCGCCGCGCGAGCTG GTGGCCGAAGTGATGCAGGAGGTGGGGCTGGACCCCGCCACGATGGATCGCTACCCGCATGAGTTCTCGGGCGGTCAACG ACAGCGTATCGCCATCGCGCGGGCCATGGTGCTGCGGCCCCGGCTGCTGGTGCTGGACGAGCCGACCTCGGCGCTGGATA TGACGGTGCAGGTGCAGATCGTGGCGCTGCTGCGCGACTTGCAGCGTAAATACGGCCTGGCCTATCTGTTCATCAGTCAC GACCTGAAAGTGGTGCGCGCGATGTCACACAAGGTCATCGTGATGCGTCAGGGCGATGTGATCGAGATGGGTGAGACCGA GGCGCTGTTTACCAATGCGCAGACCGACTATACCCGCAGCCTGATCGCGGCGGCGGGTTAG Protein sequence : MSALLEVKGLNVSFRQDGRISQAVRGVSFTVNRGETVALVGESGSGKSVSALSTVSLLGDSAIVEGSVTYDGQEMIGASE QRLMDVRGNDISFIFQEPMTSLNPLHTIRKQMAESLALHQGLVGAAALERILELLVKVGIRDPETRLDAYPHQLSGGQRQ RVMIAMALANKPDILIADEPTTALDVTIQAQILELLADLQREENMGMLFITHDLGIVRRIADRVCVMKAGEIVESGSTEE IFANPRHPYTRKLLAAEPKGRPDPVPAGAEEVARTDHLRVWFPIQRGFLRRTVGHVKAVNDASISVRAGETLGIVGESGS GKTTLALAIMRLIGSEGGITFRGEDVRSWSTRELRRLRKDMQIVFQDPFGSLSPRMTCAQIISEGLAIHKVDPHRAPREL VAEVMQEVGLDPATMDRYPHEFSGGQRQRIAIARAMVLRPRLLVLDEPTSALDMTVQVQIVALLRDLQRKYGLAYLFISH DLKVVRAMSHKVIVMRQGDVIEMGETEALFTNAQTDYTRSLIAAAG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 2e-105 | 43 |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 3e-85 | 42 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 3e-85 | 42 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 3e-85 | 42 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 3e-85 | 42 |
