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Name : lpdA (SPO0340) Accession : YP_165603.1 Strain : Ruegeria pomeroyi DSS-3 Genome accession: NC_003911 Putative virulence/resistance : Unknown Product : 2-oxoglutarate dehydrogenase E3 Function : - COG functional category : C : Energy production and conversion COG ID : COG1249 EC number : 1.8.1.4 Position : 351721 - 353109 bp Length : 1389 bp Strand : - Note : identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350 DNA sequence : ATGGCAACCTATGACGTCATCATCATCGGCGCAGGCCCCGGCGGCTATGTCTGCGCCATCCGCTGCGCCCAGCTGGGTTT GAAAACCGCCGTGGTCGAGGGCCGCGAAACCCTGGGCGGCACCTGCCTGAACGTGGGCTGCATCCCGTCCAAGGCGCTGC TGCACGCCTCGCATTCGCTGCACGAGGCGCAACACAACTTTGCCAAGATGGGACTCAAGGGCAAAAGCCCTTCGGTCGAC TGGAAGCAGATGCTCGCCTACAAGGACGAGGTGATCGAGGGCAATACCAAGGGCATCGAATTCCTGTTCAAGAAGAACAA GATCGACTGGATCAAGGGCTGGGCCTCGATCCCTGCCGCGGGCAAGGTGCAGGTGGGCGACGACACCCACGAGGCGAAGA ACATCATCATCGCCTCCGGCTCCGAACCGGCCTCGTTGCCGGGTGTCGAGGTGGACGAGAAGACCGTCGTGACCTCGACC GGCGCGCTGGAACTGGGCAAGATCCCGAAATCCCTGGTGGTGATCGGCGCCGGTGTCATCGGGCTGGAACTGGGCTCGGT CTATGCCCGCCTGGGTGCCGAGGTGACGGTGGTCGAGTTCCTCGACGTGATCACCCCCGGCATGGACGGCGAAGTGCAAA AGACCTTCCAGCGCATCCTGAAAAAGCAGGGCCTGACCTTCGTCATGGGTGCCGCGGTGCAAAAGACCGAAATCGCCAGG GGCAAGGCCAAGGTCACCTACAAGCTGCTGAAAAAGGACACCGAGCACGAGATCGAGGCAGATACCGTGCTGGTTGCCAC CGGGCGCAAACCCTATACTGCGGGTCTGGGCCTCGACAAGCTGGGGATCGAGATGACCCAGCGCGGCCAGATCAAGGTGG GCAAGGACTGGCAGACCAACGTGCCCGGCATCTACGCCATCGGCGACGTGATCGAAGGCCCGATGCTCGCCCACAAGGCC GAGGACGAGGGGATGGCCGCCGCCGAACAGGTCGCGGGCAAGCATGGTCATGTCAACTATGGCGTCATTCCCGGCGTGAT CTACACAACGCCCGAGGTCGCCAATGTCGGCGCCACCGAGGAAAGCCTCAAGGCCGAGGGCCGCGCCTACAAGGTCGGCA AGTTCATGTTCATGGGCAATGGCCGCGCCAAGGCCAATTTCGCTAGTGACGGCTTCGTCAAGATCCTCGCCGACAAGGAG ACAGACCGCATCCTTGGCGCCCATATCATCGGCCCGGCAGCGGGCGAACTGATCCACGAGGTCTGCGTCGCCATGGAATT CGGCGCCTCGGCCGAGGATCTGGCGCTGACCTGCCACGCACACCCGACCTATTCCGAGGCTGTGCGCGAGGCGGCGCTGG CCTGCGGCGACGGCCCGATCCACTCGTAA Protein sequence : MATYDVIIIGAGPGGYVCAIRCAQLGLKTAVVEGRETLGGTCLNVGCIPSKALLHASHSLHEAQHNFAKMGLKGKSPSVD WKQMLAYKDEVIEGNTKGIEFLFKKNKIDWIKGWASIPAAGKVQVGDDTHEAKNIIIASGSEPASLPGVEVDEKTVVTST GALELGKIPKSLVVIGAGVIGLELGSVYARLGAEVTVVEFLDVITPGMDGEVQKTFQRILKKQGLTFVMGAAVQKTEIAR GKAKVTYKLLKKDTEHEIEADTVLVATGRKPYTAGLGLDKLGIEMTQRGQIKVGKDWQTNVPGIYAIGDVIEGPMLAHKA EDEGMAAAEQVAGKHGHVNYGVIPGVIYTTPEVANVGATEESLKAEGRAYKVGKFMFMGNGRAKANFASDGFVKILADKE TDRILGAHIIGPAAGELIHEVCVAMEFGASAEDLALTCHAHPTYSEAVREAALACGDGPIHS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SE0077 | NP_763632.1 | dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase E3 | Not tested | SCCpbp4 | Protein | 7e-69 | 42 |
