Gene Information

Name : SPO3365 (SPO3365)
Accession : YP_168561.1
Strain : Ruegeria pomeroyi DSS-3
Genome accession: NC_003911
Putative virulence/resistance : Virulence
Product : zinc/manganese/iron ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 3565440 - 3566243 bp
Length : 804 bp
Strand : -
Note : identified by similarity to SP:P96117; match to protein family HMM PF00005

DNA sequence : 
ATGATCGAACTGGCCGCAGATAAAGGTATCCGTCTGGCGGATGAGACCATCGCCTCCAGCCCGCTGGCGGTACGCGGGCT
GACCGTGTCCTACGGGCAGAAACCGGCTGTGTTCTCGGTGGACATGACGGTGCAGCCGGGCGCGATGACCGCAATCATCG
GGCCGAACGGGGCGGGGAAATCGACCCTGCTCAAGGCGGCGCTGGGCATCGTCAAGCCGCTGTCGGGGCAGGTCACCGTG
TTTGGCCGCCCGCTCGAGGAGCAGCGCGCCCGCATCGCCTATGTTCCGCAGCGCGCCAGTGTCGACTGGGATTTCCCGAC
CCGGGTGATCGACGTTGTTCTGATGGGGCTGTATCGCGAGCTTGGCCTGCTGGGCCGCTTGCGCGCCCGCCACAAGGCGC
AGGCGCTCGACTGCCTGGCCCGTGTGGGCATGCGCGATTTCGCCGACCGCCAGATCGGCCAATTGTCGGGTGGCCAGCAG
CAGCGGGTGTTTCTGGCCCGCGCCCTGGCGCAAGACGCCGATCTCTATCTGCTGGACGAACCCTTTGCCGGGGTCGATGC
AGCGACGGAAAAGGCGATCATCTCGGTTCTGAAATCGTTGAAACAGGCCGGGCGCACCGTGGTCGTGGTGCATCACGATC
TGGCCACGGTGAGCGACTATTTCGACCATGTCTTCCTGATCAACACCCGCCGCGTTGCCGAAGGGCCGGTGGCCGAGGCC
TTTACCGCCGACAACCTGCAGGCCGCCTATGGCGGACGGCTGGCAACGGCGCAGGTCGATCAGCTGGCGCGCGTGCTGGG
CTGA

Protein sequence : 
MIELAADKGIRLADETIASSPLAVRGLTVSYGQKPAVFSVDMTVQPGAMTAIIGPNGAGKSTLLKAALGIVKPLSGQVTV
FGRPLEEQRARIAYVPQRASVDWDFPTRVIDVVLMGLYRELGLLGRLRARHKAQALDCLARVGMRDFADRQIGQLSGGQQ
QRVFLARALAQDADLYLLDEPFAGVDAATEKAIISVLKSLKQAGRTVVVVHHDLATVSDYFDHVFLINTRRVAEGPVAEA
FTADNLQAAYGGRLATAQVDQLARVLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 3e-37 44
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 2e-37 44
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 7e-33 43
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 9e-33 43
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 8e-33 43
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 8e-33 43
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-33 43
phuC YP_005686351.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 7e-20 41
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 6e-20 41
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 6e-20 41
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 7e-20 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SPO3365 YP_168561.1 zinc/manganese/iron ABC transporter ATP-binding protein BAC0400 Protein 7e-55 58
SPO3365 YP_168561.1 zinc/manganese/iron ABC transporter ATP-binding protein BAC0440 Protein 6e-37 44
SPO3365 YP_168561.1 zinc/manganese/iron ABC transporter ATP-binding protein BAC0350 Protein 4e-33 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SPO3365 YP_168561.1 zinc/manganese/iron ABC transporter ATP-binding protein VFG0526 Protein 4e-33 43