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Name : gabD-2 (SPO3328) Accession : YP_168524.1 Strain : Ruegeria pomeroyi DSS-3 Genome accession: NC_003911 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 3528642 - 3530153 bp Length : 1512 bp Strand : + Note : identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780 DNA sequence : TTGGGTGGACCCACGAATTCTAGGCGGAGACATGCCATGCTGGATGCAGCAACCGATCTGAAATCCCTTCTCAAGACACC CGACCTGTTGGCGACCAAGGCCTATATCGGCGGCCAATGGGTTGACGGCGACAACGGCACCTTTGCCGTCACCAACCCCG CGCGCGGCGACGTGATCGCCGAGGTCGCGGACCTAAGCCGAGCCCAGGTGGCGGGCGCCATCGCCCAGGCCGAGGCGGCG CAAAAGGAATGGGCCAAGTATACCGGCAAGGAACGCGCCGTGATCCTGCGTCGCTGGTACGATCTGATGATGGAACACGC CCAGGACCTGGGCCGCATCCTGACCGCCGAGCAGGGCAAGCCCCTGGCCGAGGCGGTGGGCGAAGTGGCCTATGGCGCCT CGTTCATCGAGTTCTTTGCCGAAGAGGCCAAGCGCATCTATGGCGAGACCATTCCCGGCCACCAGCGCGACAAGCGCATC ACCGTTCTGAAACAGCCGATCGGGGTGGCCGCCTCGATCACGCCGTGGAACTTCCCCAACGCGATGATCACCCGCAAGGC TGGCCCGGCGCTGGCGGCGGGCTGTGCCTTTGTCGCGCGGCCTGCTGCGGAAACCCCGCTGTCGGCGCTGGTGCTGGCGG TGCTGGCCGAAAAGGCCGGCATCCCGGCGGGCGTGTTCAACGTGGTCCCCTCGTCGCGCTCCAGCGAGATCGGCAAGGAA TTCTGCGAGAACCCAGGCGTGCGCAAGCTGACCTTCACTGGCTCGACCGAGGTGGGCCGCATCCTGCTGAAACAGGCCGC CGACCAGGTCATGAAATGCTCGATGGAACTGGGCGGCAACGCGCCCTTCATCGTGTTCGACGATGCCGATCTGGATGCCG CCGTCGAAGGTGCGATGCTGTGCAAATTCCGCAACAACGGCCAGACCTGCGTCTGCGCCAACCGGATCTATGTACAGGCG GGCGTCTATGATGCCTTTGCCGAAAAACTCGCCGCCGCCGTGGCCAAGCTGAATGTAGGCGACGGGCTGAGCGACGGGGT CACCACCGGGCCGCTGATCAATGCCGAAGCGGTCGAAAAGGTGCTGGAACACCTGGGCGATGTCACCGCCAAAGGCGGCG CGGTCCTGACCGGCGGCAAGCCCCATGCGCTGGGCGGCACCTTCTTTGAACCGACCGTGGTGACAGGCGTCACGCAAGAG ATGAAGGTTGCCAAGGAAGAAACCTTTGGCCCGCTGGCGCCGCTGTTCAAGTTCGATGACGTGGACGAGGTGATCGCCAT GGCCAACGACACGATCTTTGGCCTTGCCGCCTATTTCTATGCCAAGGATCTGAGCCGGGTCTACAAGGTCGCCGAAGCGC TGGAATATGGCATCGTCGGCGTCAATACCGGCATCATCTCGACCGAGGTCGCGCCCTTTGGCGGCATCAAGCAATCTGGC CTGGGCCGCGAGGGCAGCCATCACGGGATCGAGGACTATCTGGAGATGAAATACATCTGCATGTCGGTCTGA Protein sequence : MGGPTNSRRRHAMLDAATDLKSLLKTPDLLATKAYIGGQWVDGDNGTFAVTNPARGDVIAEVADLSRAQVAGAIAQAEAA QKEWAKYTGKERAVILRRWYDLMMEHAQDLGRILTAEQGKPLAEAVGEVAYGASFIEFFAEEAKRIYGETIPGHQRDKRI TVLKQPIGVAASITPWNFPNAMITRKAGPALAAGCAFVARPAAETPLSALVLAVLAEKAGIPAGVFNVVPSSRSSEIGKE FCENPGVRKLTFTGSTEVGRILLKQAADQVMKCSMELGGNAPFIVFDDADLDAAVEGAMLCKFRNNGQTCVCANRIYVQA GVYDAFAEKLAAAVAKLNVGDGLSDGVTTGPLINAEAVEKVLEHLGDVTAKGGAVLTGGKPHALGGTFFEPTVVTGVTQE MKVAKEETFGPLAPLFKFDDVDEVIAMANDTIFGLAAYFYAKDLSRVYKVAEALEYGIVGVNTGIISTEVAPFGGIKQSG LGREGSHHGIEDYLEMKYICMSV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 1e-138 | 64 |
| cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 6e-78 | 41 |
