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Name : clpB (SPO3276) Accession : YP_168473.1 Strain : Ruegeria pomeroyi DSS-3 Genome accession: NC_003911 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 3473444 - 3476062 bp Length : 2619 bp Strand : - Note : identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861 DNA sequence : ATGGACTTGTCTAAGTTCACCGAGCGGGCACGTGGATTCGTGCAGGCGGCGCAGACCATTGCTCTGCGCGAAGGGCATCA GCGGCTGGCGCCCGAACATATTCTCAAGGCATTGATGGATGACGATCAGGGGCTTGCAAGCAACCTGATTGCGCGCGCGG GCGGCGCATCCAAACGGGTGGTCGAGGCGCTGGACGTGGCGTTGTCCAAGATCCCAAAGGTCAGCGGCGACGCGGCCCAG GTCTATCTGGACGGCCAGACCGTCAAGGTGCTGGACGAGGCCGAGAAGGTCGCCAAGAAGGCAGGCGACAGTTTTGTCCC GGTCGAGCGCGTGCTGATGGCGCTTTGCATGGTGAAATCCAAGGCCAAAGAGGCGCTGGATGCCGGCGAGGTGACTGCGC AGAAGCTGAACGAAGCGATCAACGATATCCGCAAGGGCCGCACCGCCGACTCCGCGAGCGCCGAAGAGGGCTATGACGCG CTCAAGAAATACGCGCGCGACCTGACCGAGGCCGCAGCCGAAGGTAAGATCGACCCGATCATCGGGCGTGACGAGGAAAT CCGCCGCTCGATGCAGGTGCTGAGCCGCCGGACCAAGAACAACCCGGTGCTGATCGGTGAACCCGGCGTGGGTAAGACCG CTATCGCCGAAGGCATGGCGCTGCGCATCGTCAATGGCGATGTGCCCGAATCCTTGCGCGACAAGAAGCTCCTTGCGCTC GACATGGGCGCGCTGATTGCCGGTGCGAAATATCGCGGTGAGTTCGAAGAGCGGCTCAAGGCCGTGCTGACCGAGGTCAC CGAGGCCGCGGGCGAGATCATCCTTTTCATCGACGAGATGCACACGCTTGTGGGTGCCGGTAAATCCGACGGAGCGATGG ACGCGGCCAACCTGATCAAACCGGCGCTGGCGCGGGGCGAGCTGCACTGCATCGGCGCCACCACGCTGGATGAATACCGC AAATACGTGGAAAAGGACGCGGCCCTGGCCCGCCGGTTCCAGCCGGTTCTGGTCGAAGAGCCGACCGTCGAGGACACGAT CAGTATCCTGCGCGGTATCAAGGAGAAATACGAGCTGCACCACGGCGTCGATATTTCTGACTCAGCCCTGGTGGCTGCGG CGACGCTGTCGCATCGCTATATCACCGACCGGTTCCTGCCAGACAAGGCCATCGACCTGATGGACGAGGCAGCCAGCCGT TTGCGGATGGAGGTCGACAGCAAGCCCGAGGCGCTGGACCAGCTGGACCGTCAGATCCTGCAATTGCAGATCGAGGAAGA GGCGCTGAAGAAAGAGAACGACGCCGCCTCGCAGGACCGGCTTGCCACGCTGCAAAAGGACCTTGCCGAGTTGCAGGAGA AATCCGCCGAGATGACCGCTCAGTGGCAGGCATCGCGGGACAAGATGAACGCGGCGCAATCCGTCAAGGAACAGCTCGAA CGCGCCCGTGCCGAACTGGAGATTGCCAAGCGCGAAGGCAACCTGGCCCGAGCTGGTGAACTCAGCTACGGCATCATCCC CGAGCTTGAAAAACAGCGGGAAGAAGCCGAAGCCGGAGAGGATACCGGTCTCAAGGCCGAAGAGGTCGTGCGCCCCGAAC AGATCGCGGCGGTGGTCGAACGCTGGACCGGCATCCCGACCTCGAAGATGCTTGAAGGCGAGCGCGAGAAACTGCTGCGG ATGGAGGACGAGCTGCACAAGCGCGTCATCGGTCAGGGTACGGCGGTGACGGCAGTTGCCAATGCGGTGCGCCGGGCGCG CGCGGGTCTGAATGACGAGAACCGCCCGCTGGGCTCGTTCCTGTTCCTTGGCCCCACCGGCGTCGGTAAGACCGAGCTGA CCAAGGCGGTGGCCAACTATCTCTTTGACGACGACAATGCGATGGTGCGCATCGACATGTCCGAGTTCATGGAGAAACAC GCGGTTGCCCGTCTGATCGGCGCGCCTCCGGGCTATGTCGGTTATGACGAGGGCGGGGTGCTGACCGAGGCGGTCCGCCG CCGTCCCTATCAGGTGGTGCTGTTCGACGAGGTCGAAAAGGCGCATCCGGATGTGTTCAACGTGCTGTTGCAGGTGCTGG ACGATGGTGTGCTGACCGATGGTCAGGGCCGCACCGTCGACTTCAAGCAGACGCTGATCGTGCTGACCTCGAACCTTGGG TCCCAGGCGCTCAGCCAATTGCCCGAAGGCGCCGACAGCGCCCAGGCCCGGCGCGATGTGATGGATGCGGTCAGGGCCCA TTTCCGGCCCGAGTTCCTGAACCGGCTTGACGAGACGATCATCTTTGACCGGCTCAAGCGGGCCGATATGGACGGGATCG TGACGATCCAGCTGGGTCGTCTGGCCAAGCGCCTGGCGCAGCGCAAGATCGTGCTGGAGCTCGACGAGCCCGCGCGCAAA TGGCTGGCCGATGCGGGGTACGATCCGGTCTATGGCGCCCGCCCGCTGAAGCGCGTTATCCAGCGCGACCTGCAAAACCC GCTGGCCGAAAAGCTGCTGGCCGGCGAGATCAAGGACGGCGACACGGTGGCGATCACCGCGCGCGAAGAAGGACTGGTCA TCGGCGACCGTGTCGTCAGTTCGAGCCGGCCGCGCCCGGATGATGCTGTCGTGCATTGA Protein sequence : MDLSKFTERARGFVQAAQTIALREGHQRLAPEHILKALMDDDQGLASNLIARAGGASKRVVEALDVALSKIPKVSGDAAQ VYLDGQTVKVLDEAEKVAKKAGDSFVPVERVLMALCMVKSKAKEALDAGEVTAQKLNEAINDIRKGRTADSASAEEGYDA LKKYARDLTEAAAEGKIDPIIGRDEEIRRSMQVLSRRTKNNPVLIGEPGVGKTAIAEGMALRIVNGDVPESLRDKKLLAL DMGALIAGAKYRGEFEERLKAVLTEVTEAAGEIILFIDEMHTLVGAGKSDGAMDAANLIKPALARGELHCIGATTLDEYR KYVEKDAALARRFQPVLVEEPTVEDTISILRGIKEKYELHHGVDISDSALVAAATLSHRYITDRFLPDKAIDLMDEAASR LRMEVDSKPEALDQLDRQILQLQIEEEALKKENDAASQDRLATLQKDLAELQEKSAEMTAQWQASRDKMNAAQSVKEQLE RARAELEIAKREGNLARAGELSYGIIPELEKQREEAEAGEDTGLKAEEVVRPEQIAAVVERWTGIPTSKMLEGEREKLLR MEDELHKRVIGQGTAVTAVANAVRRARAGLNDENRPLGSFLFLGPTGVGKTELTKAVANYLFDDDNAMVRIDMSEFMEKH AVARLIGAPPGYVGYDEGGVLTEAVRRRPYQVVLFDEVEKAHPDVFNVLLQVLDDGVLTDGQGRTVDFKQTLIVLTSNLG SQALSQLPEGADSAQARRDVMDAVRAHFRPEFLNRLDETIIFDRLKRADMDGIVTIQLGRLAKRLAQRKIVLELDEPARK WLADAGYDPVYGARPLKRVIQRDLQNPLAEKLLAGEIKDGDTVAITAREEGLVIGDRVVSSSRPRPDDAVVH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-96 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_168473.1 | ATP-dependent Clp protease, ATP-binding subunit ClpB | VFG2076 | Protein | 1e-111 | 44 |
| clpB | YP_168473.1 | ATP-dependent Clp protease, ATP-binding subunit ClpB | VFG2084 | Protein | 8e-101 | 41 |
