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Name : kpsC (SPO1755) Accession : YP_166993.1 Strain : Ruegeria pomeroyi DSS-3 Genome accession: NC_003911 Putative virulence/resistance : Virulence Product : capsular polysaccharide export protein KpsC Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3563 EC number : - Position : 1875208 - 1877211 bp Length : 2004 bp Strand : - Note : identified by similarity to SP:P42217; match to protein family HMM PF05159 DNA sequence : ATGTCGCCCAGTGGCATGAACCGGGCAGCCGGGAGCGACCGCTCCCGGCTGTTCGTTTATAACGGTGGTTTTCTCACCCA ACGCCGCTTGCGCCGCATCCTGACGCTGGCGGGCTACGATATCCGGCTGGGCCTGCCGTCCGAGGGCGATCAGGTCGGTA TCTGGGGCAACAGCCCGACCGCGCATCGCGGCCTGGCCGTGGCCGCGCGCCACGCGGCCCCGCTGCTGCGGGTCGAGGAT GCCTTTCTGCGCTCGCTCTTTCCCGGCCGCGCGGGCGAACCGCCGCTGGGCCTGTTGCTGGACCGCGCGGGCGTGCATTT CGACCCCACAACGCCCAGCGATCTGGAGCAGCTGCTGACCAGCGCCCCGCTGGACGATACCACGCTGTTGAACCGGGCCC GCGACGCCATGGCGCGCATCCGCGAAAACCATCTGAGCAAGTACTGCGCCACCGATCCCGATCTGCCGCTGCCCGAACCG GGCTATGTTCTGGTGATCGACCAGACCCGCGGCGATGCTTCGGTCACCGCCAGCGGCGGCAATGACGCGCTGTTCCGCGA GATGCTTGTCTTTGCGCAAGAGGAACACCCCGGCGCAAGGGTGCTGATCAAGACCCATCCCGAAACCGCCGCCGGGTTCC GCCCCGGCTACTATGGCGAGCGCGATATCAGCGTACGCGTCAGCCTTTACGACGCCCCGCTCAGCCCCTGGGCCCTGCTC GACGGCGCAGTGGGCGTCTACACCCTGTCCTCGCAACTGGGGTTCGAGGCGATCCTGGCCGGGCACAAGCCGCGCGTCTT TGGCCAGCCCTTCTATGCCGGCTGGGGGCTGACGCTGGACGAACACCCGGTGCCCCGCCGCGAGCGCCGCCTGACGCGCG CACAGCTTTTTGCCGCCGCAATGATCCTTTATCCCACCTGGTACGATCCGTTCGGCGACAAGCTTTGCGAGCTGGAAACC GTGCTCGACACGCTTGAGGCGCAGACCCGCGCCTGGCGGCAGGATCGGGCGGGATGGACAGCGGGAGGCATGCGCCTGTG GAAACGCCGCCCGCTGAAACGCATGTTCGGACGCTTTGGCCGGATCAGCTTTACCGACACGCCCGCCGCCGGGGATCCGC GCCCGCATATGGTCTGGGCCGCGCGCGCAGCGGCCAGCGACACAGCCACCCGGGTCGAGGACGGCTTTCTGCGCTCGCGC GGGCTGGGGGCGGAACTGGTGCCGCCGCTGTCGCTGGTCACCGATGACAGTGGCATCTATTACGACCCGACCCGCCCCAG CGCATTGGAGAGCCTGATCGCCCGCCGCGCCGAGCTGCGCGCCGACCAGCGCCAGCGGGCCGAGGCGCTGATCCGCATGC TCACCACCGCGCGCATCAGCAAATACAACCTCGGCGGCGCCCTGCCCGACCTGCCCCCCGGCCACCGCATCCTGGTGCCC GGCCAGGTCGAGGACGACGCCTCGATCCTGACCGGCACCGGCGAGATACGCAGCAATCTGGACCTGTTGCGCAGCGTCCG CGCCGCGCATCCGCAGGCGGTGATCGTCTACAAGCCACACCCCGACGTCGAGGCGGGGTTGCGTGTCGGCGGCATCGACC CGGGCACGCTGGCCGATGTGATCGCGACCCAAGCCGACCCGATGCAGCTTCTGGATCAGGTGAACGAAGTCTGGACGCTG ACCTCTCTGCTGGGCTTCGAGGCCTTGCTGCGCGGCCTGCCGGTGACCACGCTCGGCGCGCCCTTCTATGCTGGCTGGGG CCTCACCCGCGACCTGGGCCCCATCCCGGCGCGGCGGCAGGCGCGGCCGGACCTGGCCGGCCTCGTCCATGCCGCGCTGA TCGACTACCCGCGCTACTGGGATCCGCGTACGGGCCAGCCCTGCCCGGTCGAGGTTGCCGCCCAACGCCTCGCCTCTGGC GCCATCCCCCATCCCGGGCCCGCCAACCGGCTGCTGTCAAAGCTGCAAGGCCTGCTGGCTACCCATGCCCATCTGTGGCG CTGA Protein sequence : MSPSGMNRAAGSDRSRLFVYNGGFLTQRRLRRILTLAGYDIRLGLPSEGDQVGIWGNSPTAHRGLAVAARHAAPLLRVED AFLRSLFPGRAGEPPLGLLLDRAGVHFDPTTPSDLEQLLTSAPLDDTTLLNRARDAMARIRENHLSKYCATDPDLPLPEP GYVLVIDQTRGDASVTASGGNDALFREMLVFAQEEHPGARVLIKTHPETAAGFRPGYYGERDISVRVSLYDAPLSPWALL DGAVGVYTLSSQLGFEAILAGHKPRVFGQPFYAGWGLTLDEHPVPRRERRLTRAQLFAAAMILYPTWYDPFGDKLCELET VLDTLEAQTRAWRQDRAGWTAGGMRLWKRRPLKRMFGRFGRISFTDTPAAGDPRPHMVWAARAAASDTATRVEDGFLRSR GLGAELVPPLSLVTDDSGIYYDPTRPSALESLIARRAELRADQRQRAEALIRMLTTARISKYNLGGALPDLPPGHRILVP GQVEDDASILTGTGEIRSNLDLLRSVRAAHPQAVIVYKPHPDVEAGLRVGGIDPGTLADVIATQADPMQLLDQVNEVWTL TSLLGFEALLRGLPVTTLGAPFYAGWGLTRDLGPIPARRQARPDLAGLVHAALIDYPRYWDPRTGQPCPVEVAAQRLASG AIPHPGPANRLLSKLQGLLATHAHLWR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsC | YP_854335.1 | capsule polysaccharide export protein KpsC | Not tested | PAI I APEC-O1 | Protein | 8e-89 | 44 |
| kpsC | AAZ04470.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 6e-89 | 44 |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 2e-86 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| kpsC | YP_166993.1 | capsular polysaccharide export protein KpsC | VFG0259 | Protein | 8e-87 | 42 |
