Gene Information

Name : SPO1624 (SPO1624)
Accession : YP_166865.1
Strain : Ruegeria pomeroyi DSS-3
Genome accession: NC_003911
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1721282 - 1721962 bp
Length : 681 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGAGCCGACGTGTGCTGATCGTCGAGGATGACGCCGAAACTCGCGAGTTCCTGGCCAAAGGCTTTGCCGAGGAAGGCTT
TGCCGTGGAATGTGCCGGGGACGGGCGCGAGGGGCTTTATCACGCCACCGATGGCGGTTTTGACGCGATGGTGCTGGACC
GGATGCTGCCCGGGCTTGATGGGCTGGCACTGATCAAGTCGGTCCGCGCCGCGGGGCTGAACACTCCGGTAATCATGCTG
ACGGCGATGAGCGCGGTGGACGAGCGCGTCAAGGGGCTGCGTGCCGGGGCCGACGACTATCTGGTCAAGCCGTTCTCGTT
TCAGGAGTTGCTGGCCCGGGTCGAGGCACTGCTGCGCCGCCCGCAGGACACGCAAGAGGCCACGGTGCTGGCCTGCCGCG
ATCTGGAGATGGACCTGATGCGCCGCAAGGTGACCCGTGCCGGGCGCGAGATCACCCTGACCCCGCGCGAGTTCCAGATC
CTCGAATTCTTCCTGCGCCGCAAGAACCGGGTGATCACCCGCACCATGCTGCTGGAGGGGGTCTGGGATTACCATTTCGA
CCCCAACACCAATATCGTCGACGTGCATATCTCGAAGCTGCGCCGCCAGATCGACGAGGGCGCCGAGGTGCCGCTGATCA
CCACGGTACGCGGCGCGGGCTACATGATCTCCGATGGCTAA

Protein sequence : 
MSRRVLIVEDDAETREFLAKGFAEEGFAVECAGDGREGLYHATDGGFDAMVLDRMLPGLDGLALIKSVRAAGLNTPVIML
TAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEALLRRPQDTQEATVLACRDLEMDLMRRKVTRAGREITLTPREFQI
LEFFLRRKNRVITRTMLLEGVWDYHFDPNTNIVDVHISKLRRQIDEGAEVPLITTVRGAGYMISDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-37 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-36 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SPO1624 YP_166865.1 DNA-binding response regulator BAC0111 Protein 2e-44 48
SPO1624 YP_166865.1 DNA-binding response regulator BAC0197 Protein 8e-40 48
SPO1624 YP_166865.1 DNA-binding response regulator BAC0347 Protein 1e-40 47
SPO1624 YP_166865.1 DNA-binding response regulator BAC0125 Protein 1e-41 46
SPO1624 YP_166865.1 DNA-binding response regulator BAC0308 Protein 9e-41 46
SPO1624 YP_166865.1 DNA-binding response regulator BAC0083 Protein 1e-42 46
SPO1624 YP_166865.1 DNA-binding response regulator BAC0638 Protein 6e-38 46
SPO1624 YP_166865.1 DNA-binding response regulator HE999704.1.gene1528. Protein 1e-32 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SPO1624 YP_166865.1 DNA-binding response regulator VFG1389 Protein 1e-31 44
SPO1624 YP_166865.1 DNA-binding response regulator VFG1390 Protein 5e-36 43
SPO1624 YP_166865.1 DNA-binding response regulator VFG0596 Protein 7e-38 42