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Name : SPO1213 (SPO1213) Accession : YP_166460.1 Strain : Ruegeria pomeroyi DSS-3 Genome accession: NC_003911 Putative virulence/resistance : Unknown Product : oligopeptide ABC transporter ATP-binding protein Function : - COG functional category : R : General function prediction only COG ID : COG1123 EC number : - Position : 1269469 - 1271139 bp Length : 1671 bp Strand : + Note : Substrate assignment partly based on location in oligopeptide ABC transporter gene cluster.; identified by similarity to SP:P75796; match to protein family HMM PF00005 DNA sequence : TTGCGAAACGGGTATAGGGTGGAACCGATGGTGGATCACAAATATGCCCTCGAGGTCGATGGCCTGACCGTCAGCTTGCC GACAAACGCCGACCGGCCAAACGCGGTCGAGAACATCAGCTTTACCGTCGCCCCGGGCGAGATCGTCTGCGTGGTCGGCG AAAGCGGCTCGGGCAAATCCGTGACCGCCTCGGCGGTCATGGGGCTTTTGCCCGATGCGCTGCGGCCGATCGCGGGCCGG ACGCTGCTTGAAGGGGAAGACACGCTTGCGGCCGACAAGAACCGCCTGCGCGACCTGCGCGGGACCCGCATGGCGATGAT CTTTCAAGAGCCGATGACGGCGCTCAACCCGGTCACGCGCGTCGGGGAACAGATCGCCGAAGTGCTTGAAATTCATACCA CCATGAGCGCGGCCGAGCGGCGTCAGCGCGCGATCGAGGTCATGGAATCGGTTCATCTGCCCGATCCCGAGAGGATGGTG GATTCCTTCCCGCACCAGCTGTCCGGGGGGCAGCGCCAGCGCATCATGATCGCGATGGCGTTGGTTCTGGACCCAATTCT GTTGATCGCGGATGAACCAACCACGGCGCTGGATGTCACCACCCAGGCGCAGATCCTCAAGCTGATCAAGGAGATGCAGG AGCGGCGCGGGACCGGTGTTCTGTTCATCACGCATGACTTTGGCGTGGTGGCGGAAATCGCCGACCGCATCGTCGTCATG CAGAATGGCCGCATTGTCGAATATGGCGACCGGGACGAAGTGCTGCAGCGTCCCAAGGCGCCCTATACGCAGATGCTCAT GCGGTCGGTCCCGTCGATGACGCCGCCCGACCGCAGCGCCAAGACCGACAAGACAGCGGTCGAAGTCACCGCGCTGAACA AGGTCTATGGCCGCACCGGCTGGCTGTCCAAAGACCGGATCGTGCACGCGGTGCAGGATGTCGATCTGCAGGTACGCAAG GGCGAGACATTGGGCATTGTCGGCGAAAGCGGCTCTGGCAAATCCACCGTCGCGCGCTGCATCGCGCGGCTGATTGATCC AACCTCGGGCTCGATCGGGCTGCACGGGGCGGAAATCGCCCATCTCACACAGGGGCAGCTGCACCCTTATCGCCGCAAGG TGCAGATCGTTTTCCAGGACCCTTACCGCTCGCTCAACCCGCGCCGCACCATCGGCCAGTCGCTGATCGAGGCGCCGATG AACTACGGGATGACCCGGGATCAGGCGCTGACGGTGGCACGCGATCTGATGGAGCTTGTCGGCCTGTCCGGCGATGCGCT GGATCGCTATCCTCACCAGTTCTCGGGCGGGCAGAGACAGCGGATCTGCATCGCCCGGGCGCTGGCGGTCGAACCCGATA TCCTGATCGCGGACGAGGCGGTCTCGGCGCTTGATGTCAGCGTTCAGGCGCAGGTGCTGAAACTGCTCGACGACATCCGG GTCAAATACAATCTGGCGATGCTCTTCATCACCCATGACCTGCGGGTGGCCGCCCAGATCTGTGACCGGCTGATCGTGAT GCAAAAGGGCGTGGTGGTCGAGCATGGGCCAACCCGTCAGGTCTATCAGGACCCTCAGCACGCCTATACCCGACTGCTGC TGGAGGCCGCGCCGGGCCAGGGCATGCGGTTCGGCTCGCAAATCCAACCTACCGTTGCCCAAGGGAGTTGA Protein sequence : MRNGYRVEPMVDHKYALEVDGLTVSLPTNADRPNAVENISFTVAPGEIVCVVGESGSGKSVTASAVMGLLPDALRPIAGR TLLEGEDTLAADKNRLRDLRGTRMAMIFQEPMTALNPVTRVGEQIAEVLEIHTTMSAAERRQRAIEVMESVHLPDPERMV DSFPHQLSGGQRQRIMIAMALVLDPILLIADEPTTALDVTTQAQILKLIKEMQERRGTGVLFITHDFGVVAEIADRIVVM QNGRIVEYGDRDEVLQRPKAPYTQMLMRSVPSMTPPDRSAKTDKTAVEVTALNKVYGRTGWLSKDRIVHAVQDVDLQVRK GETLGIVGESGSGKSTVARCIARLIDPTSGSIGLHGAEIAHLTQGQLHPYRRKVQIVFQDPYRSLNPRRTIGQSLIEAPM NYGMTRDQALTVARDLMELVGLSGDALDRYPHQFSGGQRQRICIARALAVEPDILIADEAVSALDVSVQAQVLKLLDDIR VKYNLAMLFITHDLRVAAQICDRLIVMQKGVVVEHGPTRQVYQDPQHAYTRLLLEAAPGQGMRFGSQIQPTVAQGS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 4e-85 | 44 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 4e-85 | 44 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 4e-85 | 44 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 4e-85 | 44 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 2e-102 | 41 |
