|
Name : doeC (SPO1137) Accession : YP_166388.1 Strain : Ruegeria pomeroyi DSS-3 Genome accession: NC_003911 Putative virulence/resistance : Unknown Product : aspartate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 1192817 - 1194292 bp Length : 1476 bp Strand : - Note : identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780 DNA sequence : ATGACAGAGACCGCTCTCTCTGCCCGTGCGGACATCGCCGACAAGGCGCTTGTGCGTTCTTTTTCCTACATAAACGGCAA GTGGTGCGCCGCCGCCAATGGCGAGACCTTCGCGGTCACCGACCCGGCGGACGGGACCGAGCTGGGCCATGCCGCCAGCC TTTCGGCAGAAGAATCCTCTGCGGCGGTGGACGCGGCACAGGCGGCCTTCCCGGCTTGGGCGGGAAGGTTGCCACAAGAG CGCGCGGCACTCCTGCGCCGCTGGTATGAACTGTTGCTGGAACACAAGGAAGACCTCGCCCGCATCATGGTGCTGGAACA GGGCAAGCCGCTGTCAGAAGCGCGCGGCGAAATCGACTATGGCGCGGCCTTTGTCGAATTCTATGCCGAAGAAGCCAAGC GCCCCAATATCGAGGGCGTCACTAGCCACCTGCCCGATGCCGAGGTGGAGCTGTGGCGCGAGCCGGTCGGGGTGGCGGCG CTGATCACGCCGTGGAACTTCCCCTCGGCCATGCTGACGCGCAAGGCGGCGGCGGCGCTGGCGGCGGGGTGCACCGTGGT GGCACATCCCTCGCGGGAAACCCCGTTCAGCGCGCTGGCGCTGGCTGAACTGGCCGAGCGTGCAGGCGTCCCGCCGGGCG TGTTCAACGTGGTGACCGGCACTGCCGCCACGGTGGTGGAACCCTGGACCCGCGATACCCGCGTCCGGGCGCTGTCCTTC ACCGGTTCAACCGAGATCGGCAAGCTGCTGTACCGCCAGTCGGCCGACACCGTGAAACGCCTGGTGATGGAACTGGGCGG CCACGCCCCGGTGATCGTCTTCAAGGACTGCGATCTGGACAAGGCCGTCAGCGAAACCATCAAGGCGAAGTTCGCCACCT CGGGTCAGGATTGCCTGGGCGCCAACCGTATCCTGGTAGAGCGGCCCGTCTATGCCGACTTCTGCGCCAGATTCACATTG GCCGCGCAGGCGCTGACCCTCGGGCCGGGGATGGCGGATTGCGACCTCGGTCCGCTGATGAACGAACAGGCGGTGCAAAA GCAGGAAGACCATGTGGCGGACGCGCTGGCCAGGGGCGCAAGACTGGCCTGCGGCGGCAGGCGGCATCCCCGCGGCCCGC TCTTTTATGAACCGACCGTGCTGGTCGACGTGCCGCCCGATGCGTTGATCATGAGCCAGGAAACCTTTGGCCCGGTCGCC GCGATCGCGCCTTTTGACACCGAAGAGGAGGCCGTGGCGCGCGCGAATGACAGCGAATACGGGCTGGTGGCCTATGTGCA CAGCAATGATCCGCGGCGCATCTACCGGCTGAGCCGGGCGCTGCAATACGGTATGGTGGCGGTCAATCGCACCAAGGTGA CAGGCGCGCCGATCCCTTTCGGGGGCACCAAGCAATCCGGCCTGGGCCGCGAAGGCGCCCGGCTGGGCATGGAGGCCTTT ACCGAGGTCAAATACATCTGCCGCGACTGGGCGTGA Protein sequence : MTETALSARADIADKALVRSFSYINGKWCAAANGETFAVTDPADGTELGHAASLSAEESSAAVDAAQAAFPAWAGRLPQE RAALLRRWYELLLEHKEDLARIMVLEQGKPLSEARGEIDYGAAFVEFYAEEAKRPNIEGVTSHLPDAEVELWREPVGVAA LITPWNFPSAMLTRKAAAALAAGCTVVAHPSRETPFSALALAELAERAGVPPGVFNVVTGTAATVVEPWTRDTRVRALSF TGSTEIGKLLYRQSADTVKRLVMELGGHAPVIVFKDCDLDKAVSETIKAKFATSGQDCLGANRILVERPVYADFCARFTL AAQALTLGPGMADCDLGPLMNEQAVQKQEDHVADALARGARLACGGRRHPRGPLFYEPTVLVDVPPDALIMSQETFGPVA AIAPFDTEEEAVARANDSEYGLVAYVHSNDPRRIYRLSRALQYGMVAVNRTKVTGAPIPFGGTKQSGLGREGARLGMEAF TEVKYICRDWA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 9e-97 | 52 |
| cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 1e-61 | 41 |
