Gene Information

Name : lolD (SPO1124)
Accession : YP_166375.1
Strain : Ruegeria pomeroyi DSS-3
Genome accession: NC_003911
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1181305 - 1181991 bp
Length : 687 bp
Strand : +
Note : identified by similarity to SP:P75957; match to protein family HMM PF00005

DNA sequence : 
ATGAGTGAGCCGACCCTGCGCCTGAGCGGCATCGAAAAGACCTATCTGAGCGGGACCCCCGGCGAGGTGCGGGTGCTGCG
CGGTGTCGATCTGAGCGTTGAACCGGGCGAGATGGTGGCGCTGGTGGCCCCTTCTGGCGCCGGCAAGTCGACGCTTCTGC
ATATCTCGGGCCTTCTGGATGTGCCCGACGCGGGCCGGGTCGAGATCGCCGGGCAGGACATGACCGGGCGCGGCGATCGC
GCCCGCACCGGGGTGCGGCGGCGGGATGTGGGCTTTGTCTATCAGTTCCACCACCTGCTGCCCGAATTCACCGCGCTGGA
AAACGTGGTACTGCCGCAGCTGGCCAATGGTATCGGAGAGGGCGAGGCCAGGGCGCGCGCGCGCGCGCTTCTGTCCCGTG
TCGGGGTGGAGGGGCGCGCGGGCCATCGCCCGGCGGCTTTGTCGGGAGGAGAGCAGCAGCGGGTCGCCTTTTGCCGGGCG
CTGGCCAATGCGCCGCGCCTGTTGCTGGCGGATGAGCCGACCGGCAATCTCGACCCCGCGACCTCGGATCAGGTGTTCGA
CGCGCTGGTCGAGCTGGTGCGCGGCACCGGCCTGTCGGCGCTGATCGCCACGCACAACCTCGAGCTTGCCGCCCGCATGG
ACCGGGTGGTGCGCCTGAGCGATGGGCGGTTGTCGGCCGAAAGCTGA

Protein sequence : 
MSEPTLRLSGIEKTYLSGTPGEVRVLRGVDLSVEPGEMVALVAPSGAGKSTLLHISGLLDVPDAGRVEIAGQDMTGRGDR
ARTGVRRRDVGFVYQFHHLLPEFTALENVVLPQLANGIGEGEARARARALLSRVGVEGRAGHRPAALSGGEQQRVAFCRA
LANAPRLLLADEPTGNLDPATSDQVFDALVELVRGTGLSALIATHNLELAARMDRVVRLSDGRLSAES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-18 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-18 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-18 44
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-17 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_166375.1 lipoprotein releasing system ATP-binding protein NC_008702.1.4606598. Protein 3e-24 45
lolD YP_166375.1 lipoprotein releasing system ATP-binding protein CP001581.1.gene798.p Protein 2e-19 41
lolD YP_166375.1 lipoprotein releasing system ATP-binding protein NC_012469.1.7686878. Protein 4e-23 41