Gene Information

Name : CPS_0651 (CPS_0651)
Accession : YP_267401.1
Strain : Colwellia psychrerythraea 34H
Genome accession: NC_003910
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 649884 - 650666 bp
Length : 783 bp
Strand : -
Note : identified by similarity to SP:P13792; match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence :

ATGAAAGATAATATTCTAATAATTGAAGACGAAATTGATATTGCCAAACTTATTAAGGTGCATTTATCTGAATTAGATTT
GAATTGCGATATTTGTACACAAGGAAACGAAGCATTACAACAAGCGTTAACAAAAGACTATCAGCTTATTTTGCTTGATG
TGATGTTGCCTGGTATTAGCGGCTTAGATATTTGTCGACAAGTTAGACAAGAAAAGCCGTTACAGTCCATTATTATGCTT
ACTTCTAAAACATCAGAAATAGACCGTATATTGGGCCTTGAGTTGGGGGCTGATGACTATATGACTAAACCTTTCAGTGT
TCGTGAATTACAAGCCCGCGTTAGAAGCCAATTACGCAGAGTCCATGCAATTACCGCTAAAAACGCCTCTGAAATTAATA
GCTTGGTACATGAAGAAAAACCAGTTCAAGAATCGGCTCAGTTAGATAAGACAAGTACATCGATAGGACAACTATTGGTT
GATCATAGATTTCATCAAGTCACTTATAAAAATAAAGCAATTAACTTAACGGTTACAGAATTTGAATTGATTGATTTTTT
CTGTCAACACCCTGATCAGGTATTCTCACGCGCTCAATTACTCGATGGTGTTTGGGGTTACCATCATAATGGTTATGAAC
ACACGGTTAACTCTCATATTAATCGCCTTAGAAGTAAGCTTGAGGAAGACTGTACTGAACCAAAAATAATTCAGACCGTC
TGGGGAGTTGGTTATAAACTTAATTCAGCGGGCGTAATGCCATCAACGGTATGTAAGGACTGA

Protein sequence :

MKDNILIIEDEIDIAKLIKVHLSELDLNCDICTQGNEALQQALTKDYQLILLDVMLPGISGLDICRQVRQEKPLQSIIML
TSKTSEIDRILGLELGADDYMTKPFSVRELQARVRSQLRRVHAITAKNASEINSLVHEEKPVQESAQLDKTSTSIGQLLV
DHRFHQVTYKNKAINLTVTEFELIDFFCQHPDQVFSRAQLLDGVWGYHHNGYEHTVNSHINRLRSKLEEDCTEPKIIQTV
WGVGYKLNSAGVMPSTVCKD

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	CAD42044.1	hypothetical protein	Not tested	PAI II 536	Protein	3e-41	45
c3565	NP_755440.1	response regulator	Not tested	PAI I CFT073	Protein	5e-41	45

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
CPS_0651	YP_267401.1	DNA-binding response regulator	NC_002952.2859905.p0	Protein	1e-39	41
CPS_0651	YP_267401.1	DNA-binding response regulator	NC_009782.5559369.p0	Protein	9e-40	41
CPS_0651	YP_267401.1	DNA-binding response regulator	NC_002951.3237708.p0	Protein	9e-40	41
CPS_0651	YP_267401.1	DNA-binding response regulator	NC_002758.1121668.p0	Protein	9e-40	41
CPS_0651	YP_267401.1	DNA-binding response regulator	NC_009641.5332272.p0	Protein	9e-40	41
CPS_0651	YP_267401.1	DNA-binding response regulator	NC_013450.8614421.p0	Protein	9e-40	41
CPS_0651	YP_267401.1	DNA-binding response regulator	NC_007793.3914279.p0	Protein	9e-40	41
CPS_0651	YP_267401.1	DNA-binding response regulator	NC_007622.3794472.p0	Protein	1e-39	41
CPS_0651	YP_267401.1	DNA-binding response regulator	NC_002745.1124361.p0	Protein	9e-40	41
CPS_0651	YP_267401.1	DNA-binding response regulator	DQ212986.1.gene4.p01	Protein	2e-32	41
CPS_0651	YP_267401.1	DNA-binding response regulator	EU250284.1.orf4.gene	Protein	2e-29	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
CPS_0651	YP_267401.1	DNA-binding response regulator	VFG1563	Protein	2e-41	45
CPS_0651	YP_267401.1	DNA-binding response regulator	VFG1702	Protein	2e-41	45