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Name : CPS_0594 (CPS_0594) Accession : YP_267344.1 Strain : Colwellia psychrerythraea 34H Genome accession: NC_003910 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 597300 - 599240 bp Length : 1941 bp Strand : + Note : identified by match to protein family HMM PF02719; match to protein family HMM PF07993 DNA sequence : GTGTCTTTAATTCAGTCTGTTTTGAGTTTGCCGCGTGCTTATAAACGTGCCATCTCGTTGTTGATAGATTCTATCTTTTT ATTTTGTGCTTTTTGGTTAGCATTATTTATGCGCCTTGATAGCTTCTCCCCACTATTCGACCAAGGTTACTGGCTAGTGT TTTCCTGCTCTTTACCGCTAAGTTTATTAGTTTTTGTAAAGCTGGGCCTTTATCGTGCTGTATTACGTTATATGAATATG CAAGCGGTTTGGGCTATAGCATTGGGCAGTATTTTTTCTGCCATGTTCGTTATTGGGTTTTCTTTTTTGTATACCGCAGG CATTCCTCGAACTGTTCCTTTTATTTTCATTAGCTTATGTTTGATATTGATTGGCGGCTCAAGAGTTTCAGTAAGAGCGG TAATTAGTCATCAACGCTGGCATAAAAAAGCCTCTGTATTGATATATGGCGCAGGTTCTTCAGGCCGTCAATTAGCGACG GCTTTATCACAAGGTCCTGAATATCATGCGGTGGCTTTTATTGATGATTATAAAGCGCTTCAAGGACAGATTATTCAAGG CATTCCTGTTTATTCTCCAGAAGAAATTTCCCACGTAGTTGAAAGAAAAACCGTTCAAAAAATATTATTAGCTATACCAA GCGCCTCAAGAGCAAGGAGGAAACAAGTGTTGGCTAAAATTGATTGTTTAGGTATTCAGGTATTAACCATTCCAGGTATG GCTGATATTGTTGAAGGCAAGGCTAAACTTGAAGAGTTTAAAGATGTTGGTGTTGAAGATTTATTAGGGCGTGATTCTGT AGAGCCAAAACCAGAATTGATGAATGCCGATATAGCCGATAAAGTAGTTATGGTTACTGGGGCCGGTGGCTCTATTGGCT CTGAATTATGCCGTCAGATAATTCGATTAAAACCTACTAAGCTTGTGTTGTTTGAGTTATCAGAATTCGGCTTGTATACC ATTGATAAAGAACTTAATGAATATAAGCAGCAACATGATTTAGCTGTTGAAGTATTGCCACTTTTGGGGTCAGTACAAAG GGTTAATCGCATTGAAACAGTAATGAAAAGTTTTGCCGTACAAACGGTTTACCATGCAGCAGCATACAAGCATGTGCCAT TGGTTGAGCATAATGTTGTTGAAGGAGTTAGAAACAATGTTTTTGGTACTTATTACGCAGCGCGTGCTGCGATAAATGCC AATGTTGAGACCTTTGTTTTAATCTCCACCGATAAAGCTGTTAGACCTACTAATATCATGGGTACCACTAAGCGTATGGC TGAGTTAGTACTACAGGCGTTAGCTAAAACACAACATTCTACGCGCTTTTGTATGGTGCGTTTTGGGAATGTATTGGGTT CCTCTGGTTCAGTAGTACCGCTGTTTAGAAAACAAATTAAAAATGGTGGTCCGGTAACGCTAACTCACCCTGACATCACT CGTTATTTCATGACTATTCCTGAAGCTTCGCAACTAGTTATTCAGGCTGGCGCTATGGGTAAAGGTGGCGATGTCTTTGT GCTTGATATGGGGGATGCGGTAAAAATATATGACTTAGCCAGTAACATTATTCACTTAAGTGGTTTCTCCGTTAAAAGCG CTGAATTACCTGATGGAGATATAGAGATTAAATGTACGGGTTTGAGACCAGGCGAGAAACTCTATGAGGAACTTCTTATA GGTGATAACGTTTCAGGGACTTCACATGAGCGTATTATGACTGCACAAGAAGTGATGCTTGATTGGGATGAGTTAGAGGC ATTGATATCGAGGCTTGACGATGCTTGTCATGCGTTTGATCATGAATTAATTCGTGAAATCTTACTCAAGGCGCCAACAG GTTTTAATCCTACGGATGGAATTTGTGATTTAGTCTGGCAGCAGAAAAGTACTTTACAGCAATATACGGCTGATATTATT GAACTGAAGGTTGCCACTTAG Protein sequence : MSLIQSVLSLPRAYKRAISLLIDSIFLFCAFWLALFMRLDSFSPLFDQGYWLVFSCSLPLSLLVFVKLGLYRAVLRYMNM QAVWAIALGSIFSAMFVIGFSFLYTAGIPRTVPFIFISLCLILIGGSRVSVRAVISHQRWHKKASVLIYGAGSSGRQLAT ALSQGPEYHAVAFIDDYKALQGQIIQGIPVYSPEEISHVVERKTVQKILLAIPSASRARRKQVLAKIDCLGIQVLTIPGM ADIVEGKAKLEEFKDVGVEDLLGRDSVEPKPELMNADIADKVVMVTGAGGSIGSELCRQIIRLKPTKLVLFELSEFGLYT IDKELNEYKQQHDLAVEVLPLLGSVQRVNRIETVMKSFAVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTYYAARAAINA NVETFVLISTDKAVRPTNIMGTTKRMAELVLQALAKTQHSTRFCMVRFGNVLGSSGSVVPLFRKQIKNGGPVTLTHPDIT RYFMTIPEASQLVIQAGAMGKGGDVFVLDMGDAVKIYDLASNIIHLSGFSVKSAELPDGDIEIKCTGLRPGEKLYEELLI GDNVSGTSHERIMTAQEVMLDWDELEALISRLDDACHAFDHELIREILLKAPTGFNPTDGICDLVWQQKSTLQQYTADII ELKVAT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-80 | 46 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-79 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CPS_0594 | YP_267344.1 | polysaccharide biosynthesis protein | VFG0029 | Protein | 1e-130 | 48 |
| CPS_0594 | YP_267344.1 | polysaccharide biosynthesis protein | VFG1300 | Protein | 1e-80 | 45 |
