Gene Information

Name : CPS_0590 (CPS_0590)
Accession : YP_267340.1
Strain : Colwellia psychrerythraea 34H
Genome accession: NC_003910
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis glycosyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 593142 - 593708 bp
Length : 567 bp
Strand : +
Note : identified by similarity to GP:1929427; match to protein family HMM PF02397

DNA sequence : 
ATGACCCTTTTACTTATTCGTATTTTAGATTTTATATTCTCCTTCTTTGGGTTGCTATTCGCTTGCCCATTTTTAATTAT
TTTAACCATAATTGGTTATTTTGATACTGGTTCTCCTATTTTTATTCAAGAAAGAGTAGGGCGAAATAAGAAACCTTTTA
ATTTGATCAAATTTAGAACTATGACTGTTGGTACTGCCTCTGTAGCAAGTCACTTAGCTTCAAGCGCTTCTATCACTAAC
TTTGGTAGCTTTCTTCGTAAAACTAAGCTTGATGAGTTACCACAGCTTTGGAATGTATTAAAAGGTGAGATGAGTTTGGT
GGGTCCTCGACCTAACTTGTTTAACCAAACAGAGTTAGTTCTTGAGCGTGAATCACGCGGCGTTTATAATGTACGCCCTG
GTGTTACGGGACTTTCTCAAGTCAATGAAATAGATATGTCTACGCCGATATTATTGGCTAAGACTGATGAACAAATGATT
TTAACTTTGACTATAAGTTATTATTTTAAATATATACTCCAAACTGTTACCGGTTCAGGTAGTGGTGATAGAGTTACTAA
AGATTAA

Protein sequence : 
MTLLLIRILDFIFSFFGLLFACPFLIILTIIGYFDTGSPIFIQERVGRNKKPFNLIKFRTMTVGTASVASHLASSASITN
FGSFLRKTKLDELPQLWNVLKGEMSLVGPRPNLFNQTELVLERESRGVYNVRPGVTGLSQVNEIDMSTPILLAKTDEQMI
LTLTISYYFKYILQTVTGSGSGDRVTKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 6e-20 46
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 5e-22 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPS_0590 YP_267340.1 polysaccharide biosynthesis glycosyltransferase VFG1309 Protein 7e-22 43