|
Name : topB (CPS_4792) Accession : YP_271431.1 Strain : Colwellia psychrerythraea 34H Genome accession: NC_003910 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 5077284 - 5079233 bp Length : 1950 bp Strand : + Note : decatenates replicating daughter chromosomes DNA sequence : TTGAAACTCTATATTGCCGAAAAACCGAGTTTAGGTCGCGCTATTGCTGCCGCATTACCTAAGCCACAAAAAAACCATAA AACACATATTGAGCTCGCTAACGGTGATGTGGTCAGTTGGTGTATCGGACACATTTTGGCGCAAGCAGATCCTGAAGACT ATGATGCCGAATTAAAAAAATGGCGCATGGAAAGTTTGCCTATAGTGCCGCAGCAATGGCAATTAAAACCCATTGCTCGA ACTCGCTCACAACTCACTGTCTTAAGAAAATTGGTGAAACAAGCCGATGAAATTATTCACGCAGGCGATCCCGACAGAGA AGGTCAATTACTCGTTGATGAAGTGATTGATTACTTTAAATTATCCAAAACAAAAAAAGCTAACATTAAACGTCTGCTGA TCAGCGATTTAAACTTACCTGCCGTTAAGCGAGCCCTTACGTCACTAAAACCTAATAGTGATTTTATGCCGTTATCTATT TCTGCTTTAGCACGTTCACGCGCTGATTGGCTTTATGGTATTAACCTTACCCGTGCATATACATTGCAAGGGCAAAAAAC CGGTTACAACTCGGTATTGTCCGTAGGTCGTGTGCAAACACCTTTGTTAGGTTTAGTGGTTAGACGTGAGCAAGAAATTT CAGAATTTGTCAGTAAACCATTCTTCCAAGTTCAGGCTCATATTGCACTAAGTTCAAAGGACGCCGTCGCTTTTACAGCA AAATGGCAACCAAGTGAAAACTGTCAACCATATTGCGATGAAGAAGGTCGAGTTTTGGTAAAAGCATTAGCAGAGAATGT CGTTAAACGCATTGCTAACCAACCCGCAACAATCAGTAATATTGACAGTAACGAAAAACAACAAGCCGCCCCATTACCCT TTAATTTATCGCAATTACAAATTAGTGCTGCTAAGCAGTTTTCTATGAATGCCAAGCTTGTGCTTGATGTTTGTCAGGCT TTATATGAAAGACATAAACTGATTACTTACCCACGTTCAGATTGTCGGTATTTGCCTAAAGAGCAACTAAAGCAAGCAAG TGGCATTGTTAATACACTCGCCAACTCATCATTACCTTGTAATAAACCCGCTCAAGGGGCAAATACTTCTTTTGTGAGTA AAGCATGGAACGATAAAAAAATAACCGCCCATCATGCAATTATCCCTACCGAGAAATCACCTGAGAACATCAATTTAAAT ACCTTTGAAAAAAATGTCTATTTACTGATTGTACGTCAATATTTAGTACAGTTTTATCCTGCCTATATTTTTCAGCAAAC CAAAGTGGAATTATTAATTGCTGGCGGGAATTTTATGAGCCAAGCAAAAACAGAAAAACAACTGGGCTGGCAAGTCTTAT TCCCAAAAAGTAATAAAACGAATAACCAAAGCAAGTTAGAACATGGGCAAGAACAAGAGCAAACATTGCCCCCTTTAACA AAAGGGCAACTATTACATTGCCAACAAGGCGAATTAATAGAAAAACACACGTCACCGCCGCAATCTTTTACTGATGCAAC GCTGCTCGGTGCCATGACCGGTATTTCCCGTTACGTCAATGATGCGGCCATTAAAAAAGTACTGAAAGAAACCGATGGTC TGGGTACAGACGCTACTCGCGCCGGCATTATAGATTTACTTTTTAAACGCGGGTTTTTACAACGTCAAGGCAAAGCGATT ACTGCAACGAAGGTTGGTGTTGCGTTAATCACCGCCCTGCCCACCATGGCTACTTTGCCAGATATGACAGCACAATGGGA AGCAACACTCACAGCAATCAGTGAGAAAAATGCCAACTATCTAAGCTTTATGCAACCTTTAACAGTTATAGTCAATGAGA TGGTACAAGGTGCCAGTCAGCAATCTTTTTCTGGTTTACCTAAGGTTGCTTTTAAGCCTAAACGCGGCAAACGAACATTT CAGAAGAAAGCGGTAAAAAAAGCAAGTTAG Protein sequence : MKLYIAEKPSLGRAIAAALPKPQKNHKTHIELANGDVVSWCIGHILAQADPEDYDAELKKWRMESLPIVPQQWQLKPIAR TRSQLTVLRKLVKQADEIIHAGDPDREGQLLVDEVIDYFKLSKTKKANIKRLLISDLNLPAVKRALTSLKPNSDFMPLSI SALARSRADWLYGINLTRAYTLQGQKTGYNSVLSVGRVQTPLLGLVVRREQEISEFVSKPFFQVQAHIALSSKDAVAFTA KWQPSENCQPYCDEEGRVLVKALAENVVKRIANQPATISNIDSNEKQQAAPLPFNLSQLQISAAKQFSMNAKLVLDVCQA LYERHKLITYPRSDCRYLPKEQLKQASGIVNTLANSSLPCNKPAQGANTSFVSKAWNDKKITAHHAIIPTEKSPENINLN TFEKNVYLLIVRQYLVQFYPAYIFQQTKVELLIAGGNFMSQAKTEKQLGWQVLFPKSNKTNNQSKLEHGQEQEQTLPPLT KGQLLHCQQGELIEKHTSPPQSFTDATLLGAMTGISRYVNDAAIKKVLKETDGLGTDATRAGIIDLLFKRGFLQRQGKAI TATKVGVALITALPTMATLPDMTAQWEATLTAISEKNANYLSFMQPLTVIVNEMVQGASQQSFSGLPKVAFKPKRGKRTF QKKAVKKAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 3e-111 | 41 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 3e-111 | 41 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 2e-111 | 41 |
