Gene Information

Name : CPS_4701 (CPS_4701)
Accession : YP_271345.1
Strain : Colwellia psychrerythraea 34H
Genome accession: NC_003910
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4976231 - 4976923 bp
Length : 693 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGCTAAAACTACATAATTTAACACGCGTATATCAAACTGAAGATGTAGAAACATCAGCCTTAAACAATGTAAATATTGA
AATTGCCCAAGGCGAGTTTGTTGCCATTATGGGACCATCAGGTTGTGGTAAATCAACCTTACTTAATACTATTGGTATGT
TGGATTCACCCAGTAGTGGTGATTATATCTTTAATGGCGAAAATGTTGCTGGTTATTCAGAAAAACAGCTTTCCGTTATT
CGTAAAAAAAGCATTGGTTTTATCTTTCAAAACTTTAATTTGATTGATGAGTTAACCGTTGCTGAAAATATTGAATTAGC
CTTAATTTATCACAATATTCCAGCAGCAGAGCGCAAAGCTAAAGTTGAAAAGGTCATGGATAAAGTGGGTATTGCCCATC
GCGCTAAGCACTTACCAAGTCAGTTATCTGGCGGGCAACAACAACGAGTCGCAGTCGCTAGAGCGGTTGTTGGTGATCAA
AAAATGATTTTGGCCGATGAACCAACGGGTAATTTAGACAGTGCACACGGTCAAGAAGTAATGGAAATGTTACAAGCACT
TAACGATGAAGGCACTACTATAGTGATGGTGACACATAGCCCAGCACATGCTGATTACGCTAGACGTACTATCAATTTAT
TTGATGGTCATGTGGTTGCACAAAGTGTTCGTGCTGCTGAGCAAACGGCTTAA

Protein sequence : 
MLKLHNLTRVYQTEDVETSALNNVNIEIAQGEFVAIMGPSGCGKSTLLNTIGMLDSPSSGDYIFNGENVAGYSEKQLSVI
RKKSIGFIFQNFNLIDELTVAENIELALIYHNIPAAERKAKVEKVMDKVGIAHRAKHLPSQLSGGQQQRVAVARAVVGDQ
KMILADEPTGNLDSAHGQEVMEMLQALNDEGTTIVMVTHSPAHADYARRTINLFDGHVVAQSVRAAEQTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 3e-27 46
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPS_4701 YP_271345.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-51 51
CPS_4701 YP_271345.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-40 46
CPS_4701 YP_271345.1 ABC transporter ATP-binding protein NC_012469.1.7686946. Protein 3e-24 46
CPS_4701 YP_271345.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 3e-29 44
CPS_4701 YP_271345.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 1e-31 43
CPS_4701 YP_271345.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-27 41