Gene Information

Name : CPS_4669 (CPS_4669)
Accession : YP_271313.1
Strain : Colwellia psychrerythraea 34H
Genome accession: NC_003910
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 4935258 - 4936676 bp
Length : 1419 bp
Strand : +
Note : identified by match to protein family HMM PF00171

DNA sequence : 
ATGAAAAATTTAAGCCACTTTTATATTAACGGACAATGGGTCTCTCCAGAAAAACCAAATGACTTTATCGTTGAAAACCC
TTCAAATGAACGTCAAATTGGTACTATTTCTCTAGGCACTAATGTCGATGTTGATAAAGCCGTTACCGCGGCTAGAAACG
CATTTAATCAGTATGGTTTTAGTTCAAGAGAAGAACGTATTGCACTATTAGAGAAACTATTAAGTGCCTATATGAATCGT
TATGACGAGATGGCGCAGGCTATTTCCCAAGAAATGGGCGCGCCAATCGATTTTGCCACGGCTGCTCAAGCTGATTGTGG
CCGAGGTCATATTCAAACGGCGTTGGATGCTTTAAAAAATTATGAATTTCAGCACACCTCAGGAAATGCCACCATAACCC
ATGAGCCAATTGGCGTTTGTGGATTTATTACACCGTGGAACTGGCCTATTAATCAAATTGTTTGCAAAGTTGCGCCCGCA
CTAGCCACAGGTTGCACTGTGGTTTTAAAACCGAGTGAAATTGCTCCTTTATCCGCCCATGTTTTTGCCAAAATAATTGA
TGATGCCGGTTTCCCTGCAGGAGTTTTTAATCTTGTTAATGGTGATGGAATGGGCGTTGGCTCTGCGATATCGTCTCACC
AAGATATTGATATGGTTTCTTTTACTGGCTCAACTAGAGCGGGTTCATTAATTTCGAAATCTGCAGCAGATACGGTAAAA
CGGGTGGCACTAGAGTTAGGTGGTAAATCACCGAACATTATATTTGACGATGTGGACCTAGAATCGATCGTGACTAAAGG
TGTTGTCGGCTGTATGGAAAATACGGGTCAATCATGTAACGCACCAACACGTATGCTAGTGCAAGAGTCTGTTTATGATG
ATGCCGTTAAAATAGCGACTCAAGTGGCTAATAACATAAAAATCGATAGGGCTGATAAGCCAGGTAATCATATTGGCCCA
TTAGTTAGCAAAGCCCACTTTGATAAAGTACAAAGCATGATCAAAGAAGCAATAGAATCAGGCGCTACATTATCAGCCGG
TGGTCTCGGTAAGCCTGAAGGTTTTGAATTGGGTCATTTCACCAAACCGACAATATTCTCAAATGTGAACAATAAAATGA
ACATCGCACAAGAGGAAGTATTTGGCCCCGTTTTGGTGATCATTCCTTTCAAAGATGAGCAAGAAGCGATCACGTTAGCA
AACGATTCTCCTTATGGTTTAGCTGCCTATATAAATACCCCTGATGAAACAAAAGCGAGCCGTGTTGCAAGGCAAATGAG
GGCTGGAATGGTAAGGATTAACTGGGCTTCACATCATTACACTTCCCCGTTTGGTGGTTATAAACAATCAGGAAATGGTC
GTGAGTGGGGAACATATGGCTTTGATGATTATTTAGAAATTAAAGCGACTAGCCGTTAG

Protein sequence : 
MKNLSHFYINGQWVSPEKPNDFIVENPSNERQIGTISLGTNVDVDKAVTAARNAFNQYGFSSREERIALLEKLLSAYMNR
YDEMAQAISQEMGAPIDFATAAQADCGRGHIQTALDALKNYEFQHTSGNATITHEPIGVCGFITPWNWPINQIVCKVAPA
LATGCTVVLKPSEIAPLSAHVFAKIIDDAGFPAGVFNLVNGDGMGVGSAISSHQDIDMVSFTGSTRAGSLISKSAADTVK
RVALELGGKSPNIIFDDVDLESIVTKGVVGCMENTGQSCNAPTRMLVQESVYDDAVKIATQVANNIKIDRADKPGNHIGP
LVSKAHFDKVQSMIKEAIESGATLSAGGLGKPEGFELGHFTKPTIFSNVNNKMNIAQEEVFGPVLVIIPFKDEQEAITLA
NDSPYGLAAYINTPDETKASRVARQMRAGMVRINWASHHYTSPFGGYKQSGNGREWGTYGFDDYLEIKATSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-48 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPS_4669 YP_271313.1 aldehyde dehydrogenase VFG0082 Protein 4e-49 44