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Name : gabD2 (CPS_4665) Accession : YP_271309.1 Strain : Colwellia psychrerythraea 34H Genome accession: NC_003910 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 4929982 - 4931466 bp Length : 1485 bp Strand : - Note : identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780 DNA sequence : ATGACTGAAGTTACTTGTAATTTAGAAGCCGCGGGCATAAAAGACAGCCAGCTTATCAAACCATTTTCATATATTAACGG CAGTTGGCATAGTAGTGAAACACAATTCCCAGTAATCAACCCATCGACTGGGGAAGTTGTTGCTCAAGTGAGTAATGCTG ATGTAGCCGAAACTGAATTGGCGGTGTCTGCTGCCAAAGGTGCATTAAAAATGTGGTCAGCTAAATCGGCCAACGAACGT GCAACTCTGTTACGTAACTGGTTTAATTTAGTAATGGAAAATCAAGATGACCTAGGACGTATCCTAACGTTAGAGCAAGG TAAACCTCTAGCTGAAGCTAAAGGTGAAATTGCCTACGGTGCGGCATTTTTAGAATGGTTTGCTGAAGAAGGTAAACGCG TTTACGGCGATACCATCCCTGCGCTTTCGAGTGATAAAAAAATTGTTGTTATTAAGCAGCCCGTTGGCGTAGTTGCTTCT ATTACCCCATGGAACTTCCCAAATGCGATGATCGCCCGTAAAGCGGCGGCGGCGTTAGCTGCAGGTTGTACTTTTGTGGT TAGACCGTCTGAATCTACACCGTTGTCGGCATTAGCAATGGCTGAATTAGCAGAGCGAGCAGGTATTCCTGCTGGCGTAT TTAACGTTGTTGTTGGTAGTAACTCTCGCGGCATGGGGCAAGTATTAACACAACATCCTGATGTTGCAAAATTCACTTTC ACCGGTTCGACTGGCGTTGGCAAATTATTATTAACTCAATGTGCAACAACCGTGAAAAAAGTATCAATGGAATTAGGTGG TAATGCACCCTTTATTGTTTTTAACGATGCCGATATTGATGCTGCGGTACAAGGTGCGATTATTTCTAAATACCGTAATG CAGGTCAAACGTGTGTTTGTACCAATCGTATTCTTGTACAACAAGGCGTATTAGAAGAATTTACCGAAAAATTCAAAAAT GCAGTAGCTGAATTGCACATTGGTGATGGTTTAGTCGAGGGCGTTAACCTTGGCCCAATGATTTCAGATAAAGCGGTTTG TGATGTTGAAAAACTGGTTGCTGACTCTATTGCGGCAGGTGCAAAAGTTGCCTTTGGCGGACAGCGTTCAGAAGCAGGTG AACTGTTCTATCAGCCAACAATCCTAACTGGCGTGACCAATGATATGCCCATTGCAGCCAATGAAATTTTTGGTCCAGTT TCACCTATTATTGCTTTTGAAACTGAAGAAGAAGCGATTGAACTTGCCAACGATACAGAATACGGCTTAGCGGCGTATTT CTATTCTCGCGACATTGGAACGGTTTGGCGAGTAGCTGAAGGGCTTGAGTTTGGCATGGTAGGTATTAATGAAGGCATTA TTTCTAACGCTGCTGCTCCATTTGGTGGTGTTAAACAATCAGGTAACGGCCGCGAAGGTTCAAAATACGGCTTAGACGAT TACTTAGAAATTAAATACCTATGTATGGGCGGTTTAGATAAATAG Protein sequence : MTEVTCNLEAAGIKDSQLIKPFSYINGSWHSSETQFPVINPSTGEVVAQVSNADVAETELAVSAAKGALKMWSAKSANER ATLLRNWFNLVMENQDDLGRILTLEQGKPLAEAKGEIAYGAAFLEWFAEEGKRVYGDTIPALSSDKKIVVIKQPVGVVAS ITPWNFPNAMIARKAAAALAAGCTFVVRPSESTPLSALAMAELAERAGIPAGVFNVVVGSNSRGMGQVLTQHPDVAKFTF TGSTGVGKLLLTQCATTVKKVSMELGGNAPFIVFNDADIDAAVQGAIISKYRNAGQTCVCTNRILVQQGVLEEFTEKFKN AVAELHIGDGLVEGVNLGPMISDKAVCDVEKLVADSIAAGAKVAFGGQRSEAGELFYQPTILTGVTNDMPIAANEIFGPV SPIIAFETEEEAIELANDTEYGLAAYFYSRDIGTVWRVAEGLEFGMVGINEGIISNAAAPFGGVKQSGNGREGSKYGLDD YLEIKYLCMGGLDK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 1e-132 | 59 |
| cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 7e-78 | 42 |
