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Name : gspD (CPS_4591) Accession : YP_271238.1 Strain : Colwellia psychrerythraea 34H Genome accession: NC_003910 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 4844410 - 4846503 bp Length : 2094 bp Strand : - Note : identified by similarity to SP:P31780; similarity to GP:4139236; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 DNA sequence : ATGATGAAAAAGTTTTTACTCATTCTAACGACAGCGATAACCATCAATTGCTTATGTTTGGTTGGTCAAGCAAGTGCCGC TCAGTATTCTCCTAATTTTAAGGGCACTGAAATTACCGAATTTGTAAATATCGTTGGTAAAAACCTGAAAAAAACCATGA TAGTAGATCCCAATGTCCGCGGAAAAATCAATGTCCGTAGTTATGATTTGTTATCGGAAAAACAATACTATCAATTCTTT CTCAATGTGCTTGAAGTGTATGGTTATGCTGCCGTTGAAATGGACAATAATATTGTCAAAATTATTCGTAATAAAGACGC GAAAACAGCGGCTATTCCTGTAGTAGGTAATAAAAGTAATATCATCGGTGATGAGATGGTTACCCGTGTTGTTGAAGTGA AGAATGTTACGGTACGTGAATTAGTGCCACTGTTACGACAATTGTCAGACCAAGCGGGTGGCGGCAATGTCGTAAACTAC GACCCTGCTAACGTGATCATGTTAACGGGTACCGCTTCAACAGTTAATCGACTAGTAAAAATTATTGAACGTGTTGATAG AGCGGGTGATCAAGATGTTGAAATTATCAAACTTAAGTATGCTTCAGCGGGTGAAATGGTACGTATCATCGAAGCGATGA ATAAACCTTCTGGTGGTAAAGCAGGTCAACCTACTTTTTTAATTCCTAAAATTGTTGCCGATGATCGGTCTAATAGCGTG ATTGTTAGCGGTGAAGTGAAAGCCCGTGAACGAGTAGCACGCTTGGTTAAACGTTTAGATAGTGAATTAGAAAGTAACGG TAATACTCGGGTGTATTACCTTAAATATTCAAAAGCTGAAGATTTAGTTAAAGTGCTGCAAGGTGTTAGTGACTCAATTG CTTCAGAAACAACGACAGCGAAAACAAAAACACGTTCTAGTAAAAAACGTGACGTAAGTATTGAAGCGCATGAATCAACT AATGCCTTAGTAATTACCGCACAACCCGATATGTTACGTTCATTAGAGGCTGTAATTCGTCAATTAGATGTGCGTCGCGC ACAGGTATTAGTTGAAGCGATTATCGTTGAAGTGTTTGAAAGTGACGGCGTTAGTTTAGGTGTTCAGTGGTATAACGAAG CAGGTGGTTTTACGCAGTTTACTAATGGCCCTGCGAGCATTTCTTCGGTTGCTGCAGGAGTTCAAGCAGCGGAAGGAGAA CCTGCGACTAAAGTAACTACTATTGACGCAAATGGTAACCCTGTAATATCAGAAAATCCTTCTACTGACGGTGATTATAG CATTCTTGCTCAAGTACTCGGTAATGTTAGCGGTATGATGTTTGGTATTGCTAAAAATGACTGGGGCGCGATTGTGAGTG CGGTAAGTAGTGATACTAATTCGAATATTTTAGCTACGCCGAGCATTACCACCTTAGATAATGAAGAGGCTTACTTTATT GTTGGTCAAGAAGTGCCAATTATTACCGGTTCAGCAACGGGTAGTAATAACGCCAACCCTTTCCAGACAGTAGACCGTCA AGAAGTGGGCATTAAACTACGTGTTACCCCGCAAGTGAATGAAGGCAATGCGGTGCAACTGATTATTGAACAAGAAGTGT CTTCAGTCAGCGGTACCACAGGTGTAGATATCTCAATTAATAAAAGAGAGATTAAAACCACTGTAATGGCTGATAGTGGC GATACCGTGATACTCGGAGGTTTGATAGATGAAGACGTGCAAGAAAGTGTGCAGAAGGTGCCAATTCTTGGTGATATTCC AATTATTGGTCACTTGTTTAAATCAACTAGCAACAGCACACGTAAGCGTAATTTAATGGTGTTTTTACGCGCTACAATTG TTCGTGATTCAGCGTTAATGACAGAGATTAGTGAATCAAAATATAACTACATTCGTGCTGATCAAATTCGTAAACATGAG GAAGGTTTATCGTTAATGAGTAACGAAAACATGCCAATCTTACCGCAGTGGCAAGATAACCTAACCTTACCACCGTCATT TAATGAGTATCAGCAGAAGCTTGAGGACAAAGGTACAGAGTTACCTAAACCTCCTGTAACAACAGAAGGCGTTGCTGCGG AAGAGAAGCAATAA Protein sequence : MMKKFLLILTTAITINCLCLVGQASAAQYSPNFKGTEITEFVNIVGKNLKKTMIVDPNVRGKINVRSYDLLSEKQYYQFF LNVLEVYGYAAVEMDNNIVKIIRNKDAKTAAIPVVGNKSNIIGDEMVTRVVEVKNVTVRELVPLLRQLSDQAGGGNVVNY DPANVIMLTGTASTVNRLVKIIERVDRAGDQDVEIIKLKYASAGEMVRIIEAMNKPSGGKAGQPTFLIPKIVADDRSNSV IVSGEVKARERVARLVKRLDSELESNGNTRVYYLKYSKAEDLVKVLQGVSDSIASETTTAKTKTRSSKKRDVSIEAHEST NALVITAQPDMLRSLEAVIRQLDVRRAQVLVEAIIVEVFESDGVSLGVQWYNEAGGFTQFTNGPASISSVAAGVQAAEGE PATKVTTIDANGNPVISENPSTDGDYSILAQVLGNVSGMMFGIAKNDWGAIVSAVSSDTNSNILATPSITTLDNEEAYFI VGQEVPIITGSATGSNNANPFQTVDRQEVGIKLRVTPQVNEGNAVQLIIEQEVSSVSGTTGVDISINKREIKTTVMADSG DTVILGGLIDEDVQESVQKVPILGDIPIIGHLFKSTSNSTRKRNLMVFLRATIVRDSALMTEISESKYNYIRADQIRKHE EGLSLMSNENMPILPQWQDNLTLPPSFNEYQQKLEDKGTELPKPPVTTEGVAAEEKQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-151 | 53 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 1e-158 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspD | YP_271238.1 | general secretion pathway protein D | VFG2047 | Protein | 4e-150 | 52 |
