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Name : gspF (CPS_4589) Accession : YP_271236.1 Strain : Colwellia psychrerythraea 34H Genome accession: NC_003910 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 4841581 - 4842822 bp Length : 1242 bp Strand : - Note : identified by similarity to GP:4139238; match to protein family HMM PF00482; match to protein family HMM TIGR02120 DNA sequence : ATGGCAGCATTTGAATACCAAGCGGTAGATAGTCGCGGTAAAACTAAAAAAGGCGTTATCGAAGGTGATACTGCTAGGCA AGTGCGCGGTTTATTGCGCGAGCAAGGCTTAATGCCAACCGCTGTTACTGCAACATTAGCGAGTCATAAAAAATCGAATG ATAAAAAAAGTTTGTCGGCAGGCTTTAGCCAAAGTGGTGGCGGTAAAGTCTCTGCTGCAGAGTTAGCGCTTATCACTCGT CAATTGGCAACCTTAATTGAATCAGGATTGCCATTAGAAGAGTCGTTAATGGCGGTTGCAGAGCAATGTGAAAAGAACCG TATTAAAAGTATGATCATGGGTGTTCGCACCAAAGTGACTGAAGGCTACGGGTTATCTGAAAGCATGGCAGAATATCCTA AAGCGTTTAATCGTTTGTATCGGTCTATGGTTGCCGCAGGCGAAAAGTCAGGTCATCTTGATAAAGTACTTAATCGCTTG GCTGATTATACTGAGAAACGTCAAGAGATGCGCTCACAACTCATCCAGGCACTTGTTTACCCTATTATAATGACGGTTGT CGCTGTTGGCGTAATTGCTATTTTGTTAACGGCCGTAGTACCCAAAATTGTCGGTCAGTTTGAACACATGGGTGAAAATT TACCTGGCACTACGCAATTTTTGATTGCCAGCAGTGATTTTCTTCGGGATTATGGCCTAGTACTGGTAATACTATTTGCA GCAGTAGTATTGTTGTTTTCACAGTTATTAAAAAAGCCTAATTTTGAAATGGCATTTCATCAGTATTTATTGCAGATTCC TGGTATTGGTAAAGTAGCACGAGGAATTAACACTGCTCGCTTTGCCCGTACATTAAGTATTTTGACAGCAAGTGCAGTTC CCTTGTTAGAAAGTATGAAAATATCAGGTGAAGTACTTGATAACTTATATATTAAAAAACAAGTGAAAGCATCGACCGAC AAAGTACGTGAGGGCTCGAGTTTACGTGTGTCATTGGAGCAAACTAAGTTGTTTCCACCTATGATGTTGCACATGATAGC AAGTGGCGAAAAAAGTGGCCAATTAGAGCATATGTTAGGTCGCGCTGCAGATAACCAAGATAGAGAGTTTGATGCTTTAG TGAGTATTACATTGAAGGCATTTGAACCAGCATTGATGGTTTGCATGGCAGGCGTTGTACTTTTTATTGTGATGGCCATT TTAGAACCCATTCTGCAACTTAATAGCCTAGTGGGCGGCTAA Protein sequence : MAAFEYQAVDSRGKTKKGVIEGDTARQVRGLLREQGLMPTAVTATLASHKKSNDKKSLSAGFSQSGGGKVSAAELALITR QLATLIESGLPLEESLMAVAEQCEKNRIKSMIMGVRTKVTEGYGLSESMAEYPKAFNRLYRSMVAAGEKSGHLDKVLNRL ADYTEKRQEMRSQLIQALVYPIIMTVVAVGVIAILLTAVVPKIVGQFEHMGENLPGTTQFLIASSDFLRDYGLVLVILFA AVVLLFSQLLKKPNFEMAFHQYLLQIPGIGKVARGINTARFARTLSILTASAVPLLESMKISGEVLDNLYIKKQVKASTD KVREGSSLRVSLEQTKLFPPMMLHMIASGEKSGQLEHMLGRAADNQDREFDALVSITLKAFEPALMVCMAGVVLFIVMAI LEPILQLNSLVGG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-99 | 54 |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 8e-100 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspF | YP_271236.1 | general secretion pathway protein F | VFG2049 | Protein | 4e-96 | 53 |
| gspF | YP_271236.1 | general secretion pathway protein F | VFG0181 | Protein | 6e-90 | 48 |
| gspF | YP_271236.1 | general secretion pathway protein F | VFG1870 | Protein | 1e-87 | 45 |
