Gene Information

Name : CPS_4416 (CPS_4416)
Accession : YP_271065.1
Strain : Colwellia psychrerythraea 34H
Genome accession: NC_003910
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4653428 - 4654162 bp
Length : 735 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence :
ATGAAAAATATAGTTACCATGTCAAACATCCACAAACGTTACGATGGTCAGCAAATAGAAACCCATGCTTTACAAGGCGT
TAGTTTAGAAATAAATCAAGGGGAGTTTGTTGCAATTACCGGTCCTTCTGGTTGCGGTAAATCGACATTGCTTTCTATTA
TGGGTTTAATGGACTCAGCTACAGAGGGGACATATCAACTCGCCAATATTTCGACTGCAGGCTTAAAAGTGGACCAACGC
ACGCAAATTCGCAATGAGCATATTGGTTATGTTTTTCAATCATTTAACTTAATAGATAACTTGACTGTATTTGAAAATGT
CGCCTTGCCACTTGAACACAGAGGTTGTTCTAAAAGTGAGATAAAAACCCGCGTTGAGAAAGTATTGACGCAAGTTGATA
TGTTACATCGCCAACATTATCGTCCAAACCAATTATCTGGCGGTCAACAACAACGTATTGCTATTGCACGTGCCCTTGTT
GGTAAACCTGACCTGATTTTAGTTGATGAGCCAACGGGTAACTTAGACAGTAAGAATGGTGACCAAGTGATGTCACTATT
AGAACAACTTAATAAAGATGGATCCACCATAGTCATGGTAACCCATGACAGTCGCTATTCACGTTGTGCTAGTCGCCAAA
TTCAACTGCTCGATGGTCAGATTGTTTCAGAGATTAATGCAGGACTAAGTCCACACGTTGAAAACAATGAAAAGTCATTA
CAGGGGGTTGCATGA

Protein sequence :
MKNIVTMSNIHKRYDGQQIETHALQGVSLEINQGEFVAITGPSGCGKSTLLSIMGLMDSATEGTYQLANISTAGLKVDQR
TQIRNEHIGYVFQSFNLIDNLTVFENVALPLEHRGCSKSEIKTRVEKVLTQVDMLHRQHYRPNQLSGGQQQRIAIARALV
GKPDLILVDEPTGNLDSKNGDQVMSLLEQLNKDGSTIVMVTHDSRYSRCASRQIQLLDGQIVSEINAGLSPHVENNEKSL
QGVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 5e-35 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPS_4416 YP_271065.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 3e-51 48
CPS_4416 YP_271065.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 3e-42 44
CPS_4416 YP_271065.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 1e-37 43
CPS_4416 YP_271065.1 ABC transporter ATP-binding protein NC_012469.1.7686946. Protein 2e-31 42
CPS_4416 YP_271065.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 7e-36 41