Gene Information

Name : glnA (CPS_0400)
Accession : YP_267158.1
Strain : Colwellia psychrerythraea 34H
Genome accession: NC_003910
Putative virulence/resistance : Virulence
Product : glutamine synthetase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0174
EC number : 6.3.1.2
Position : 407001 - 408407 bp
Length : 1407 bp
Strand : -
Note : forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltra

DNA sequence :
ATGTCACAAGCAGTATTCGACTTAATTAAAGAACACGACGTCAAATTTATTGACCTTCGCTTTACTGATTCAAAAGGTAA
AGAACAGCACATTTCTATTCCTCATCATCAAGTAACTGAAGACTTTTTCGAAGATGGCAAAATGTTTGACGGTTCATCTA
TTGAAGGCTGGAAAGGCATTGACGAATCTGACATGGTTATGATGCCTGATGCATCAACAGCGATCCTAGACCCTTTTACT
GATGCTGTTACTTTAAATATCCGTTGTGATATTTTAGAGCCAAGCACAATGCAAGGTTACAGCCGTGATCCTCGTTCTGT
TGCTAATCGCGCTGAAGAATATCTACGTAGTACTGGTATTGCCGATGATGTATTAGTTGGTCCAGAACCAGAGTTCTTCG
TATTTGACGATGTACGTTTCCATACTGATATGAGTGGTTCTTTTTATAAAATTGATGATAAAGAAGCTTCTTGGAACTCA
GGTACTGAATACGAAGAAGGCAATATGGGTCATCGTCCTGGTGTTAAAGGCGGTTATTTCCCAACAGCTCCAGTTGATTC
ATCACAAGATTTACGTTCAGCTATGTGCTTAGTTATGGAAGATATGGGCTTAATTGTTGAAGCACATCACCATGAAGTAG
CTACCTGTGGCCAAAACGAAATTGCTTGTCGCTTTAATACACTGGTTAAAAAAGCTGATGAAGTTCAAATTTATAAGTAT
GTTGTTCATAACGTAGCACATGCTTACGGTAAAACAGCGACTTTCATGCCTAAGCCTTTAGTTGGTGATAACGGCACTGG
TATGCACGTACATATGTCTCTTGCTAAAGATGGTGTTAACTTATTCGCTGGTGATAAGTACGGCGGTTTGTCTGAAACAG
CGCTTTACTACATTGGTGGTATCATCAAACATGCTAAGGCATTAAACGCGTTTACTAACCCTGCGACTAACTCATACAAA
CGTTTAGTTCCACATTTTGAAGCACCTGTTATGCTTGCATACTCTGCACGTAACCGCTCTGCATCAATTCGTATTCCACT
TGTACCATCACCAAAAGCAATGCGTATTGAAGCACGTTTCCCTGATCCTGCATGTAACCCATACTTAGCTTTCTCTGCTT
TATTAATGGCGGGTCTTGACGGTATTAAAAACAAAACCCACCCTGGCGATGCTATGGATAAGGATTTATACGACTTACCA
GCAGAAGAAGCCGCATCAATTCCACAAGTAGCAACATCTCTTGATGACGCACTTGATAATTTAGAAGCAGATTTTGAATT
CTTAACCGCTGGCGGCGTTATGGATAAAGATATGATTGATGCTTATATTGCTATTAAGCGTGAAGAATCTCGACGTGTAA
ACATGACTACTCACCCGTTAGAGTTTGAACTTTACTACAGCGTTTAA

Protein sequence :
MSQAVFDLIKEHDVKFIDLRFTDSKGKEQHISIPHHQVTEDFFEDGKMFDGSSIEGWKGIDESDMVMMPDASTAILDPFT
DAVTLNIRCDILEPSTMQGYSRDPRSVANRAEEYLRSTGIADDVLVGPEPEFFVFDDVRFHTDMSGSFYKIDDKEASWNS
GTEYEEGNMGHRPGVKGGYFPTAPVDSSQDLRSAMCLVMEDMGLIVEAHHHEVATCGQNEIACRFNTLVKKADEVQIYKY
VVHNVAHAYGKTATFMPKPLVGDNGTGMHVHMSLAKDGVNLFAGDKYGGLSETALYYIGGIIKHAKALNAFTNPATNSYK
RLVPHFEAPVMLAYSARNRSASIRIPLVPSPKAMRIEARFPDPACNPYLAFSALLMAGLDGIKNKTHPGDAMDKDLYDLP
AEEAASIPQVATSLDDALDNLEADFEFLTAGGVMDKDMIDAYIAIKREESRRVNMTTHPLEFELYYSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
glnA YP_003728749.1 glutamine synthetase Not tested cag PAI Protein 1e-99 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
glnA YP_267158.1 glutamine synthetase VFG1399 Protein 7e-114 54