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Name : clpB (CPS_3913) Accession : YP_270571.1 Strain : Colwellia psychrerythraea 34H Genome accession: NC_003910 Putative virulence/resistance : Virulence Product : ATP-dependent chaperone protein ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 4086397 - 4088982 bp Length : 2586 bp Strand : - Note : identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 DNA sequence : ATGCGATTAGATCGTTTTACCCAATCATTTCAAGAATCCATTGCCGATGCGCAATCACTTGCCCTTGGCAAAGACCATCA GTTCATTGAACCCGTTCATTTAATGATGGCGTTATTGAATCAAAACGGCAATTCTATCATTGCGTTATTGAAGAGTGCAG GTATTGATGTGCGCTCTTTACGTCAGAAACTAGATGAAGCGTTAAGCTCATTAGCACAAGTGCAAGACAGCGCTGGCGAT GTACAACTATCAGCAGCTTCAGGGCGAATTTTAAATCTTTGCGATAAGCATGCGCAAAAAATGTCAGATAAATTCATTTC CTCAGAGATGTTTTTACTCGCGGTTATCGATGATAAAGGTCCTTTAGGTCAAATCCTGGCCGAATTAGGCGCAAACCAGC AACGGATAAAGTCGGCAATCGATCATGTACGAGGTGGTGAAAATGTTGACGATCAAAATGCAGAAGATGTTCGCCAGGCC CTAAATAAATATACGGTTGATTTAACAGAACTTGCTGAGCATGGAAAACTTGATCCTGTTATCGGTCGAGATGATGAGAT CCGCCGCACTTTGCAAGTATTACAACGACGTACTAAAAACAATCCAGTACTCATAGGGCAACCCGGTGTTGGTAAAACTG CCATTGTTGAAGGTTTAGCTCAGCGCATTGTGAATAATGAAGTGCCTGAAGGCTTGAAAAATAAGCGAGTTTTGTCACTA GATATGGGATCTCTTGTTGCAGGAGCAAAATATCGAGGTGAATTTGAAGAGCGTTTAAAAGCTGTTTTAAATGAATTGTC AAAAGAAGAAGGGCAAGTCATTCTCTTTATTGATGAATTGCACACTATGGTCGGTGCTGGAAAGTCAGATGGTGCTATGG ATGCCGGTAATATGTTAAAACCAGCATTAGCACGTGGTGATTTACATTGTGTGGGGGCCACTACGCTTGATGAATATCGA AAGTATATTGAAAAAGATGCTGCACTTGAACGACGTTTTCAAAAAGTACTGGTAGAAGAGCCAAGTGTGGAAGATACCAT TGCAATTTTACGTGGTTTAAAAGAACGTTATGAACTGCATCATTCGGTAAATATTACCGATCCAGCTATTGTCGCTGCCG CAACATTATCCCATCGCTATATCAGTGATCGACAATTACCGGATAAAGCGATTGATCTTATTGACGAGGCCGCCTCAAGT ATTCGTTTACAGATGGACTCCAAACCAGAAGATTTAGATAGACTCGAACGACGGTTAATACAGTTAAAGCTTGAGCAAAG AGCATTAGAAAAGGATGAAGATGAGGCTACCATCAAGCGTTTGGCAATCATTTCTCAACAAATTTCTGAAAAGCAGAAAA AGTATGATGAGTTAGATGAAGTTTGGACCACTGAAAAAGCAGCGCTTTATGGCGCTCATACGATAAAAGAAGAACTTGAA CAAGCACGAATAGAACTTGAAGCGGCAAGACGAACTGGCGATTTAAATCGCATGTCTGAGCTGCAGTATGGAAAATTACC AGAGCTAGAAAAGCAATTAGATTTAGCAAGCCAAGCTGAAATGCAAGAAATGACTTTATTAGCCAATAAAGTTACTGAAG TTGAAATCGCCGATGTTCTTAGTCGCGCAACCGGTATTCCTGTTGCTAAAATGTTGGAGCAAGAGCGTGATAAATTATTA CATATGGAAGATAACCTACACCAAAATGTAATTGGTCAACATGAAGCAGTAACCTCAGTGTCTAATGCGATTAGACGATC CCGTGCTGGTTTAAGCGATCCTAATCAGCCAATTGGTTCATTTTTATTCTTAGGCCCAACGGGTGTTGGTAAAACGGAGT TAACTAAAGCGCTTGCAGAGTTTTTATTTGACTCACAAGATGCTTTAATTCGTGTTGATATGTCAGAGTTTATGGAAAAA CACTCGGTCGCACGTCTAGTGGGAGCTCCTCCTGGTTATGTTGGTTATGAAGAGGGTGGTTATCTAACCGAAGCAGTACG CAGAAAACCTTACTCAGTCATCTTACTTGATGAGATAGAAAAAGCTCACCCGGATGTCTTTAATATTTTATTACAAGTCT TAGATGATGGCAGATTAACTGATGGGCAAGGCAGAACAGTAGATTTTAAAAACACTGTTATCATCATGACCTCAAATATT GGCTCTGACATTATTCAAGAGTTAGCTGGTGAAAGTCAGTATCACCAGATGAAAGAAGAAGTAATGAATACATTAGGTCA GCATTTTAAACCTGAGTTTATTAATCGTGTCGATGAGTCAGTAGTATTCCATCCATTGGTTGCTGAACAAATCAAGAAAA TTGCAAAAATACAAATTGAAGCGTTAGCAGACCGATTAATCGAGCAAGAGCTAAATTTAACTATAAATGAAGAAGCACTT TCACTCATTTCTGCGGCGGGATTCGACCCAATATTCGGTGCGAGACCACTGAAACGAGCAATACAGCAAGGTGTTGAAAA CCCATTAGCCCAAAAAATACTCGGTAATGAATTTACTAAAGGCTGTATTATTGAAGTGAGTGTTGTAGAAGGACAATTAG CTTTTTCTGCTAAATCACCTCATTGA Protein sequence : MRLDRFTQSFQESIADAQSLALGKDHQFIEPVHLMMALLNQNGNSIIALLKSAGIDVRSLRQKLDEALSSLAQVQDSAGD VQLSAASGRILNLCDKHAQKMSDKFISSEMFLLAVIDDKGPLGQILAELGANQQRIKSAIDHVRGGENVDDQNAEDVRQA LNKYTVDLTELAEHGKLDPVIGRDDEIRRTLQVLQRRTKNNPVLIGQPGVGKTAIVEGLAQRIVNNEVPEGLKNKRVLSL DMGSLVAGAKYRGEFEERLKAVLNELSKEEGQVILFIDELHTMVGAGKSDGAMDAGNMLKPALARGDLHCVGATTLDEYR KYIEKDAALERRFQKVLVEEPSVEDTIAILRGLKERYELHHSVNITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASS IRLQMDSKPEDLDRLERRLIQLKLEQRALEKDEDEATIKRLAIISQQISEKQKKYDELDEVWTTEKAALYGAHTIKEELE QARIELEAARRTGDLNRMSELQYGKLPELEKQLDLASQAEMQEMTLLANKVTEVEIADVLSRATGIPVAKMLEQERDKLL HMEDNLHQNVIGQHEAVTSVSNAIRRSRAGLSDPNQPIGSFLFLGPTGVGKTELTKALAEFLFDSQDALIRVDMSEFMEK HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIIMTSNI GSDIIQELAGESQYHQMKEEVMNTLGQHFKPEFINRVDESVVFHPLVAEQIKKIAKIQIEALADRLIEQELNLTINEEAL SLISAAGFDPIFGARPLKRAIQQGVENPLAQKILGNEFTKGCIIEVSVVEGQLAFSAKSPH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 6e-171 | 46 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 5e-103 | 42 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 2e-103 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 2e-103 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_270571.1 | ATP-dependent chaperone protein ClpB | VFG2084 | Protein | 4e-105 | 44 |
| clpB | YP_270571.1 | ATP-dependent chaperone protein ClpB | VFG0079 | Protein | 5e-143 | 42 |
